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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G025200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 280aa MW: 30468.3 Da PI: 5.1688 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.5e-18 | 64 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Manes.03G025200.1.p 64 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 114 68*****998.**********854...59*********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 26 | No hit | No description |
Pfam | PF00847 | 3.3E-12 | 64 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 65 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.629 | 65 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 65 | 122 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-34 | 65 | 128 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.30E-30 | 66 | 124 | No hit | No description |
PRINTS | PR00367 | 4.8E-10 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-10 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MAGPIRANSN SETESSFNSS SSSSSCSPSS PSSSGLLSPN PVNKPCSEEN PRRPKRARDN 60 SKHPVYRGVR MRTWGKWVSE IREPRKKNRI WLGTFSTPEM AARAHDVAAL SIKGDSVILN 120 FPELSSSLPR PASNSPRDVQ AAAAKAASME FSINSNSVVD DHPHRRHDHD NNYISNNNAS 180 SSSTITQSSS SSTAEVTSSP CYVTTPDELS EIVELPNLGS SLEESLELRD EFVFGDTWLY 240 NPPAYEDYYG GSGYFSDHQL PIIPESMITG GFEVFLGDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 60 | 122 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G025200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021607928.1 | 0.0 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 2e-56 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2C9W431 | 0.0 | A0A2C9W431_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_013506m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-49 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G025200.1.p |
Publications ? help Back to Top | |||
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