PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G020500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 296aa    MW: 33323.9 Da    PI: 6.7722
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G020500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.5e-36211132103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F++k+y+i++d+++++li+w + +nsfvv+d+ +f++++Lp yFkhsnf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k
  Manes.03G020500.1.p  21 FVMKTYQIVNDPSTDTLITWGKANNSFVVIDPLDFSQRILPAYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQK 101
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r++++
  Manes.03G020500.1.p 102 HLLKNIVRRRKS 113
                          ******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-5317110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-3418110IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3718110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3021110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-182144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEERKECLWD MEANNNIVAP FVMKTYQIVN DPSTDTLITW GKANNSFVVI DPLDFSQRIL  60
PAYFKHSNFS SFVRQLNTYG FRKVDPDRWE FANEWFLRGQ KHLLKNIVRR RKSKGCCLQT  120
NNKIENLGNE ELFMEIVGLN QEQSVIEKEL EGMNKRLEAT ERRPRQMMYF LNKVIEDPDL  180
LPRMMLQKEK TSNKKPCLMI SSSLTSMSTS SGGGAVVSSS VKSVDEEGNL GVISSQETGF  240
CQSLQSPETN IIRWMGENYY GHDTAANSLT SISMGGEIGN SNVTVVRGSV FAAGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-251111311123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G020500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596252.11e-134heat stress transcription factor C-1-like
SwissprotQ9LV525e-86HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A2C9W3S10.0A0A2C9W3S1_MANES; Uncharacterized protein
STRINGcassava4.1_012917m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.18e-87heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]