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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.03G011800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TALE | ||||||||
Protein Properties | Length: 431aa MW: 47863.1 Da PI: 6.4336 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.4 | 9.9e-08 | 378 | 411 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Manes.03G011800.1.p 378 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 411 569*****************************87 PP | |||||||
2 | ELK | 26.4 | 1.6e-09 | 332 | 353 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y++++ ++++E++ Manes.03G011800.1.p 332 ELKHELKHGYKEKIADIREEIL 353 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.1E-20 | 164 | 208 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.2E-17 | 166 | 207 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.2E-27 | 220 | 275 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.4E-20 | 225 | 274 | IPR005541 | KNOX2 |
SMART | SM01188 | 0.0047 | 332 | 353 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.69 | 332 | 352 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 352 | 415 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.19E-16 | 354 | 417 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.5E-11 | 354 | 419 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.45E-11 | 355 | 416 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-25 | 359 | 416 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-17 | 372 | 411 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MAFHHNLSQD LPLHHFSSEQ TQPPRQQNMP ETTAAPNWLN NALLRAQHPQ PPPHSHFTGD 60 TNFLNLHTAS TTNSDSTASQ NHTQWLSRSS SFLNRNHSDV IDDVTVATAG DSIIAGTISH 120 ESADLKTNIN NNGETMNNKS EGGVFESGGG GGGGGDGVVN WQNARYKAEI LSHPLYDQLL 180 SAHVACLRIA TPVDQLPRID AQLAQSQHVV AKYSALGGGT QGLVVDDKEL DQFMTHYFLL 240 LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSLTGVSPGE GTGATMSDDD EDQVDSDANL 300 FDPSFDGSDT MGFGPLIPTE SERSLMERVR HELKHELKHG YKEKIADIRE EILRKRRAGK 360 LPGDTTSVLK AWWQSHAKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPSTS 420 TVLKSKRKRS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 2e-12 | 355 | 419 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 408 | 428 | RKRNWHSNPSTSTVLKSKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.03G011800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021607880.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | P48000 | 0.0 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A2C9W3K8 | 0.0 | A0A2C9W3K8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023294m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 0.0 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Manes.03G011800.1.p |
Publications ? help Back to Top | |||
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