PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G008900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 454aa    MW: 49604.5 Da    PI: 8.6761
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G008900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.31.3e-27124181259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+vk+s+ +rsYY+C++++C++kkkv+r+++  ++++i+Y g+Hnh+
  Manes.03G008900.1.p 124 SDGYSWRKYGQKQVKNSNSSRSYYKCAHSDCHAKKKVQRCDHHSHIIDIVYIGDHNHD 181
                          7********************************************************7 PP
2WRKY955.2e-30320377259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dgy+WrKYGqK+vkg+ + rsYYrCts+gCp++k+ver++++  + +itYeg+H+h+
  Manes.03G008900.1.p 320 TDGYRWRKYGQKMVKGNSHLRSYYRCTSTGCPARKHVERATDNAATATITYEGKHDHD 377
                          6********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-26115181IPR003657WRKY domain
SuperFamilySSF1182909.02E-25117182IPR003657WRKY domain
PROSITE profilePS5081121.413118183IPR003657WRKY domain
SMARTSM007741.2E-30123182IPR003657WRKY domain
PfamPF031061.7E-22125181IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-31305379IPR003657WRKY domain
SuperFamilySSF1182904.58E-26313379IPR003657WRKY domain
PROSITE profilePS5081130.446314379IPR003657WRKY domain
SMARTSM007743.4E-35319378IPR003657WRKY domain
PfamPF031062.2E-24321376IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MADSGAKRES RTLYSNASVS DCPSFSNLRQ SVLATHSSTS RFQGQHETSQ RDNGVRKKPK  60
VDGAKLELQA EYANPSISIS PLASAASFLP HSEPGIPTSG LILDHQNADC NACLSHIVKE  120
TPASDGYSWR KYGQKQVKNS NSSRSYYKCA HSDCHAKKKV QRCDHHSHII DIVYIGDHNH  180
DLSQNKCNVS RVSAASSKLA AGRRFVDSIQ KVDGADMSIC QEDPKQASVH IAESEQSSSS  240
SYGDIRIKVE EHNGNGMDSK RFVAEHQKNS SCGIADAEVL EKLGAEPMLK KRSVYSALLL  300
EANKEIKLVV HATADRGIST DGYRWRKYGQ KMVKGNSHLR SYYRCTSTGC PARKHVERAT  360
DNAATATITY EGKHDHDMPV LKKQKGPESL GRISSAATLN GADCKKTKSL SSQRISAEWS  420
GDLMDEKVLE LGGEKALESA RTLLSIGIEL EHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-25123379274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G008900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276160.0KT827616.1 Manihot esculenta WRKY transcription factor 41 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606763.10.0WRKY transcription factor WRKY24-like
TrEMBLA0A2C9W3H40.0A0A2C9W3H4_MANES; Uncharacterized protein
STRINGcassava4.1_008787m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16159610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-63WRKY DNA-binding protein 32