PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.03G006000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 328aa    MW: 36417.9 Da    PI: 6.5889
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.03G006000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.33.1e-08436436
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                         + C+ +++  ++lfC+ ++ +lC +C ++ H  
  Manes.03G006000.1.p  4 KLCDSCKSATATLFCRADSAFLCINCDSNVHAA 36
                         68***************************9954 PP
2zf-B_box27.85.3e-094691342
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Manes.03G006000.1.p 46 VWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                         689*****************************66899999*99986 PP
3CCT68.61.7e-23266309144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Manes.03G006000.1.p 266 REARVLRYKEKRKNRKFEKTIRYASRKAYAEMRPRIKGRFTKRS 309
                          9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.836148IPR000315B-box-type zinc finger
PfamPF006437.2E-6443IPR000315B-box-type zinc finger
CDDcd000217.44E-10548No hitNo description
PROSITE profilePS5011910.8934491IPR000315B-box-type zinc finger
PfamPF006432.2E-74691IPR000315B-box-type zinc finger
CDDcd000212.04E-94791No hitNo description
SMARTSM003361.3E-104991IPR000315B-box-type zinc finger
PfamPF062031.4E-17266308IPR010402CCT domain
PROSITE profilePS5101716.36266308IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCINCD SNVHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYELVGS DPAVKPNINF LDDSYFSDVD  120
GDAVVSREEV EAASWLLPNH PNPKMMESPD LNTNHYVFSD MEPYLDLDYG PSPSVYPKLE  180
AYEQNDSTTD GVVPVQSKSV QAPLVNDHYF GLDFTASKPL AYGYNTQSGC PSHIVSSSYL  240
DVGVVPDGGN MMESTNQKVQ LSAVDREARV LRYKEKRKNR KFEKTIRYAS RKAYAEMRPR  300
IKGRFTKRSN SEVDRSSIYE FGVVPSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.03G006000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607441.10.0zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-136COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A2C9W3E10.0A0A2C9W3E1_MANES; Uncharacterized protein
STRINGcassava4.1_011725m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-137CONSTANS-like 4