PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G222200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 381aa    MW: 41343 Da    PI: 9.0651
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G222200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.81.6e-12427226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                         k elCr+f+r G C+yG+rCkF H+
  Manes.02G222200.1.p  4 KKELCRNFQR-GSCQYGERCKFLHV 27
                         89********.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.065229IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-9426IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10427IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MPLKKELCRN FQRGSCQYGE RCKFLHVAPQ QQQKPNNNAF GLGSQQLQHQ QQNRFSNPFG  60
FGVQSKSPND FANKQQQFKP FENKWTRFSP IPNGGTLPRQ PDNQPQAVNH NCTDPDSCKR  120
LIVEDFENEK PLWKLTCYGH SKNGPCDIVG DVSYEELRAA AYDDSKRGMS LQSIVERERN  180
SLNSKLTEFE NLLRNPYIAP PKSAPSPSPF PGLTSNAIST TGEKNVPPAV SSFSQLGASL  240
NIGSTTRPST TLNNAFGQPN LLPNSSQTSN AFGFGARPSA SSSNAFGQPD IISHSSQTSR  300
AFGTNSFAPA NAVSTEMANS SSALPTIISD APKSASNAGG PVTNHIQSVN GMQKGIVSRD  360
ASIWLKENWI PGEVLLMTHL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G222200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604576.10.0zinc finger CCCH domain-containing protein 46 isoform X1
RefseqXP_021604578.10.0zinc finger CCCH domain-containing protein 46 isoform X1
TrEMBLA0A2C9WGA40.0A0A2C9WGA4_MANES; Uncharacterized protein
STRINGGorai.012G009900.11e-128(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.22e-72C3H family protein