PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G197900.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 263aa MW: 28806.1 Da PI: 5.7788

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G197900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	9.8e-13	198	243	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveY+k Lq Manes.02G197900.2.p 198 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVEYVKFLQ 243 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.932	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.27E-16	195	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.22E-12	196	247	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-16	197	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-13	198	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	198	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042335	Biological Process	cuticle development
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MQPTPSGSGN SSGGDGGGGE LNRGGLARFR SAPATWLEAL LEDEEEEDLL KPNQTLTQLL 60 ASNTPSTRNS VPFASSSISV EPGNLFEPTG FKRQNSSPAD FLGNSGLGSD GYFSSFGIPS 120 NYDYMSPNMD VSPSGKRARE VELHHPSGRY PSLLKGEQSG EVPSRASSLI EMEMDKLLED 180 SVPCRVRAKR GCATHPRSIA ERVRRTRISD RIRKLQELVP NMDKQTNTAD MLDEAVEYVK 240 FLQRQIQELT EHQRKCTCIA KE*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00181	DAP	Transfer from AT1G35460	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G197900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021603708.1	0.0	transcription factor bHLH81-like isoform X2
Refseq	XP_021603709.1	0.0	transcription factor bHLH81-like isoform X2
Swissprot	Q9M0R0	2e-92	BH081_ARATH; Transcription factor bHLH81
TrEMBL	A0A2C9WFK2	0.0	A0A2C9WFK2_MANES; Uncharacterized protein
STRING	cassava4.1_013899m	1e-162	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09180.1	2e-84	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.02G197900.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]