PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G195200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 364aa    MW: 42293.3 Da    PI: 8.4362
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G195200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.1e-076586223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         +C+ Cg sF+ + +Lk+H+++H
  Manes.02G195200.1.p 65 TCQECGASFKKPAYLKQHMQSH 86
                         6*******************99 PP
2zf-C2H219.33.2e-0692116123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          ++C+  dC+ s++rk++L+rH+ tH
  Manes.02G195200.1.p  92 FVCSadDCHASYRRKDHLTRHLLTH 116
                          89*********************99 PP
3zf-C2H214.69.2e-05121146123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          +kCp  +C++ F  + n krH +  H
  Manes.02G195200.1.p 121 FKCPikNCNREFIFQGNVKRHVKElH 146
                          89********************9988 PP
4zf-C2H223.41.5e-07160184123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          y+C+   Cgk+F+ +s L++H  +H
  Manes.02G195200.1.p 160 YVCHeiGCGKVFKYPSKLQKHEESH 184
                          9********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355152042IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2242047IPR007087Zinc finger, C2H2
SMARTSM003550.00436486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.4456491IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-76592IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576674.13E-1078118No hitNo description
PROSITE profilePS5015710.07692121IPR007087Zinc finger, C2H2
SMARTSM003550.02392116IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-993118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
SuperFamilySSF576679.38E-7102151No hitNo description
Gene3DG3DSA:3.30.160.603.1E-4119143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.021121146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.635121151IPR007087Zinc finger, C2H2
PROSITE patternPS000280123146IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-5155186No hitNo description
Gene3DG3DSA:3.30.160.602.9E-8156184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0012160184IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.198160189IPR007087Zinc finger, C2H2
PROSITE patternPS000280162184IPR007087Zinc finger, C2H2
SMARTSM0035513192217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194217IPR007087Zinc finger, C2H2
SMARTSM003557.4220241IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.83E-6231288No hitNo description
PROSITE profilePS5015710.803251281IPR007087Zinc finger, C2H2
SMARTSM003550.1251276IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4252280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280253276IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-4281304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558282308IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280284308IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEETAEIERP RPIFRDIRRY FCDYCGICRS KKSLITSHIQ THHKEEMDKE EAHGEEKIEG  60
VKSNTCQECG ASFKKPAYLK QHMQSHSLMR PFVCSADDCH ASYRRKDHLT RHLLTHEGKL  120
FKCPIKNCNR EFIFQGNVKR HVKELHSENS PPTNVGQKQY VCHEIGCGKV FKYPSKLQKH  180
EESHVKLESV EAFCAEPGCM KHFSNAECLK AHIHSCHRYV TCEICGTEQL KKNLKRHLRT  240
HEVGGQSMER IKCHFEDCCH TFSSKTNLNL HIKALHLEGR PFTCGFPGCD MRFAYKHVRD  300
KHEKSGCHVY TLGDFEESDE QFRSRARGGR KRKCPTVEML IRKRVTPPTD LDECHAWFQS  360
MES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A4e-176821219155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D4e-176821219155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G195200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605191.10.0transcription factor IIIA-like
SwissprotQ84MZ41e-148TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2C9WI280.0A0A2C9WI28_MANES; Uncharacterized protein
STRINGcassava4.1_010279m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-150transcription factor IIIA