PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G186500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 580aa    MW: 64771.8 Da    PI: 4.3835
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G186500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.55.1e-53201462128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          ppGfrFhPtdeelv +yLk+k+ +++l+l ++i+e+d+yk++P++Lp +  +k+++++w+fFs+rd+ky++g r+nrat +gyWkatgkd
  Manes.02G186500.1.p  20 PPGFRFHPTDEELVLYYLKRKMCKRRLQL-DIIRELDVYKWDPEELPgQsVLKTGDRQWFFFSPRDRKYPNGARSNRATGQGYWKATGKD 108
                          8****************************.99**************96347788999********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ ++++vglkktLvfy+grap+ge+tdWvmhey+l
  Manes.02G186500.1.p 109 RTIKC-NSRNVGLKKTLVFYRGRAPNGERTDWVMHEYTL 146
                          *****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-6018169IPR003441NAC domain
PROSITE profilePS5100555.94819169IPR003441NAC domain
PfamPF023651.2E-2720146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MTVTSASCLD REEGDDKVWP PGFRFHPTDE ELVLYYLKRK MCKRRLQLDI IRELDVYKWD  60
PEELPGQSVL KTGDRQWFFF SPRDRKYPNG ARSNRATGQG YWKATGKDRT IKCNSRNVGL  120
KKTLVFYRGR APNGERTDWV MHEYTLDEEE LKRCLNVQDY YALYKVYKKS GPGPKNGEQY  180
GAPFKEEDWA DDEYAVANNS DTPVNQPNVV TPPVDAIKAI VQVEQPLNGI EDFMKQIADE  240
NPFDQNQISD CDYTSELLQI AGEDETQSIL VDPSLREVIF PESISLSPET VQRDSLDFNQ  300
SAISTFQSLE VPEPTSGPHS SEGALQLCED NFLELDDLIG PEPTLLNNEK TANNLSFDDF  360
DGLSEFDLYH DAELFLNEMG PVSHVNEVGL QLQFHSMANQ VDYQLQPHSA VNDVDYLQPE  420
AFDAAHLWVD DQRSNVHVTA ETTHGILSQP TPGVAHESSS IPTGANENQS SGEDGGATGW  480
FSSALWTFVE SIPTTPASAC ETPLVNKAFE RMSSFSRIRL NVKNNNINND NLISSDRAAN  540
SNKAGGTSRG FLILSILGAL CAILWVLSGP SVLKRAIFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-502014616140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13845RKMCKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G186500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051420.0KR605142.1 Manihot esculenta NAC transcription factors 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603416.10.0NAC domain-containing protein 17-like isoform X1
TrEMBLA0A0M4FSE20.0A0A0M4FSE2_MANES; NAC transcription factors 4
STRINGcassava4.1_004386m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-146NAC domain containing protein 17
Publications ? help Back to Top
  1. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]