PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G182000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 459aa    MW: 48601.5 Da    PI: 6.8882
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G182000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20223272255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Manes.02G182000.1.p 223 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 272
                          7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-14223272IPR001471AP2/ERF domain
PROSITE profilePS5103225.712223280IPR001471AP2/ERF domain
SMARTSM003803.8E-37223286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-33223281IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-22223281IPR016177DNA-binding domain
PRINTSPR003671.3E-11224235IPR001471AP2/ERF domain
CDDcd000184.52E-15231282No hitNo description
PRINTSPR003671.3E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MCLLNVKVAN QKGSGEYSRS PATTDSGDDD DHQRYPQIVT SQSGLNQPVQ VPTQSPTMFP  60
GYGGCTGEMS AMVSALSHVV SGQRAGDWGH GAGLGSVITS GYGGIGLASA SSSSSSSSPA  120
LSAYSSTSGS GFWIGQKRGR EEVGATQSMP RVYRGFGDFR SSQGDSSSSG ATVKEEAAAS  180
IIVPTMTTTT TTTTTTATTF ATAPPTSLTE TVSYEETGER RRRYRGVRQR PWGKWAAEIR  240
DPHKAARVWL GTFDTAEAAA RAYDEAALRF RGNRAKLNFP EHVRVLPPPM ENIPVSQIPF  300
GRQPQSQLQP MPSQPPQAPP QAAILPQFFQ SQSDTMRDYW EYSQLLQSTG DLHGASSLLE  360
QMIYNQQLAS LQSNFPLSSS LSSFSSLSSS IAAPSIAASS SGSLSSLSSS TTSASFPLLL  420
AGQQLGYFQS PQNQNPPTGS DFPVPPWSDS SHYPSSTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23222283163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218223ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G182000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6237179e-66KJ623717.1 Pyrus x bretschneideri ethylene response factor 3 (ERF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021602177.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2C9WF070.0A0A2C9WF07_MANES; Uncharacterized protein
STRINGcassava4.1_007311m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-16ERF family protein