PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G173200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 336aa    MW: 38373.6 Da    PI: 9.16
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G173200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-172166147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W + Ed++l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  Manes.02G173200.1.p 21 RGHWRPAEDDKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 66
                         899*****************************.***********996 PP
2Myb_DNA-binding612.5e-1973116146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r+++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Manes.02G173200.1.p  73 RKPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 116
                          789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9631667IPR017930Myb domain
SMARTSM007172.0E-142069IPR001005SANT/Myb domain
SuperFamilySSF466891.76E-2920114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-272274IPR009057Homeodomain-like
PfamPF139218.8E-182484No hitNo description
CDDcd001672.44E-132465No hitNo description
PROSITE profilePS5129427.69368122IPR017930Myb domain
SMARTSM007171.3E-1672120IPR001005SANT/Myb domain
CDDcd001671.36E-775115No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2175121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDEPVASNSC DDTKTGTTCP RGHWRPAEDD KLRQLVEQYG AQNWNSIAEK LQGRSGKSCR  60
LRWFNQLDPR INRKPFTEEE EERLLAAHRI HGNKWALIAR LFPGRTDNAV KNHWHVIMAR  120
KQRERSKLSG KRSYQEGLSD SSSTPDDLHP RKSRSQDLFS SRIGFENGTR VLNFRNLSAD  180
RIFSVVSSSP SWTFAPAAIT VSNTSPSAVE HLSSRKEGRD CFNNSSFYTT ESFNISDHTS  240
IYRCYPKSSM HRSSTVFGLP NYRRVVPSPF GYLKLEDEHE NNIGMIKNEQ VNFWDNSSMF  300
KNNMKVSKQA EQGDQESIRH EEVQFIDFLG VGISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31211217107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G173200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707901e-118AB970790.1 Populus tremula x Populus tremuloides PtxtMYB158 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605542.10.0transcription factor MYB64-like
TrEMBLA0A2C9WHF00.0A0A2C9WHF0_MANES; Uncharacterized protein
STRINGcassava4.1_034025m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.16e-64myb domain protein 52