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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G148500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 36960.8 Da PI: 6.1844 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.4e-13 | 131 | 182 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A++++k+L+ Manes.02G148500.1.p 131 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIVGGAINFVKELE 182 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.51E-13 | 129 | 185 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.9E-13 | 130 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-16 | 130 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.478 | 130 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-11 | 131 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.4E-10 | 136 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MALDAVVYPQ DPFSYGYRDC YSFPIGGAWC CDFDLQEEEN AFLGIHENSK SNLEQHGDLH 60 ANWDSSSPSV MKQPKDQWDP NSSPETCTVD QYITPPPGVF HSMVPPPPTT AGRRKRRRTK 120 STKNKEEIEN QRMTHIAVER NRRKQMNEYL AVLRSLMPPS YVQRGDQASI VGGAINFVKE 180 LEQLLLTMEA HKKTKQQPAD VSGFSSSPFA EFFAFPQYST RALATGEESI ADQNQWSVAD 240 IEVTMVESHA NLKILSKKKP RQLLKMVAGL QALRLSVLHL NVTTVDQLVL YSVSVKVEEG 300 CYLNTVDEIA AAVNQMLHRI HEEEAVFS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 117 | RKRRR |
2 | 113 | 118 | RKRRRT |
3 | 131 | 142 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G148500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021603678.1 | 0.0 | transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 5e-99 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A2C9WFH9 | 0.0 | A0A2C9WFH9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_011679m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF718 | 34 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-86 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G148500.1.p |
Publications ? help Back to Top | |||
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