PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G147300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 309aa    MW: 32988.8 Da    PI: 7.4632
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G147300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.24e-3358112358
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                          +vrY+eClkNhA+s+GghavDGCgEfm++ geegt +alkCaAC+CHRnFHR+e +
  Manes.02G147300.1.p  58 SVRYRECLKNHAVSIGGHAVDGCGEFMAA-GEEGTLDALKCAACNCHRNFHRKEID 112
                          79**************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.3E-3159111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.6E-3060111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2360110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.69961110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.19E-20179252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-31181253IPR009057Homeodomain-like
TIGRFAMsTIGR015652.6E-26194250IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDFDEHEDQE EVMGLAVPAG YDTISNSSRP KMGPAGGEGA STTAAATATT NARKSGSSVR  60
YRECLKNHAV SIGGHAVDGC GEFMAAGEEG TLDALKCAAC NCHRNFHRKE IDGGGEAIYH  120
HHQHHPQFSP FYRAPPPAGY LHLAPPHQHR PLALPAASGG GAGGAVYSRE EEDVSNPSSS  180
GGGGGGGGAT GSSKKRFRTK FTLEQKDKML DFSEKLGWRI QKHDEAAVEQ FCAETGVKRH  240
VLKVWMHNNK HTLAFTPTLS CIVPSAKEIM RKEARAYDLA TSSAIDTFSE RKNGKVESFD  300
VKLVGVVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-281932521675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G147300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605260.10.0zinc-finger homeodomain protein 2-like
SwissprotQ6YXH56e-75ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A2C9WGM60.0A0A2C9WGM6_MANES; Uncharacterized protein
STRINGcassava4.1_022296m1e-180(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-69homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]