PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Manes.02G145400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 232aa MW: 25107.5 Da PI: 8.9552

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G145400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.1	9e-15	44	91	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++h+e+ErrRR+riN +++Lr+llP+a +K +Ka+ L ++v+++++L Manes.02G145400.1.p 44 CKSHKEAERRRRQRINAHLSTLRTLLPNA-----TKTDKASLLAEVVHHVREL 91 789************************.....9*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.088	42	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-12	44	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.9E-14	45	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.82E-13	45	94	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.8E-14	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-12	48	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	2.3E-4	146	210	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MLPFQSCYEF VHNDPSVVNF KDLDAGESIV SSSSRSEKKS TDACKSHKEA ERRRRQRINA 60 HLSTLRTLLP NATKTDKASL LAEVVHHVRE LRKQAARVVC PDRDGFCSAS SSTGGGGSEP 120 EKYCAFPGES DEATLSYCDG EAKMMRVSIC CEDRPGLNRE LSQAIRLVRA RAVRAEMMTV 180 GGRTKSVVVL QWSSGGGGDE DVGILRRALK AVVENRVSGS GLGLVVHGIK K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G145400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021605406.1	1e-170	transcription factor bHLH30-like
TrEMBL	A0A2C9WDX7	1e-168	A0A2C9WDX7_MANES; Uncharacterized protein
STRING	cassava4.1_015347m	1e-169	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11441	28	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	4e-28	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.02G145400.1.p