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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Manes.02G145300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 268aa MW: 30118.8 Da PI: 8.6901 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.02G145300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 89.2 | 2.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+iifs tgkl+ey+s
Manes.02G145300.1.p 9 KKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEYCS 59
68***********************************************96 PP
|
| 2 | K-box | 44.2 | 8.3e-16 | 91 | 171 | 19 | 99 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ a L+kei + +++R+++Ge+L+ L+++eLqqLe+ Le +l+++ ++K + ++++i l kk +l eenk+L++k++
Manes.02G145300.1.p 91 SHRAHLNKEIAEKTQQLRQMMGENLQGLDIEELQQLEKLLEAGLSRVLETKGDKMMNEILMLEKKGAQLLEENKQLKEKMM 171
55678999999999999*************************************************************986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 29.899 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 3.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.2E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 8.63E-31 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.22E-33 | 12 | 75 | No hit | No description |
| PRINTS | PR00404 | 7.2E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.2E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 12.838 | 86 | 177 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 2.0E-15 | 94 | 170 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD AEVALIIFSA TGKLFEYCSS 60
STKDVIARYN LHSNNLDKLE RPSLELELEN SHRAHLNKEI AEKTQQLRQM MGENLQGLDI 120
EELQQLEKLL EAGLSRVLET KGDKMMNEIL MLEKKGAQLL EENKQLKEKM MRILSKGKGP 180
ALLEWDGGIH QEEGMSSESA TNFCSYPTGP PLPLADDSYY TSLKLGKHGS KSNKFSLNFS 240
LKRAAIYLLL SVNCFAGCPF EDGGKTR*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
