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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Manes.02G140000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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| Family |
SRS |
| Protein Properties |
Length: 352aa MW: 36498.9 Da PI: 7.5965 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Manes.02G140000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 219.2 | 8.9e-68 | 132 | 291 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92
sgt++CqdCGnqakkdC+++RCRtCCksrg+dC+thvkstWvpaa+rrerq ++aaa + +s ++ k++r ++++++ s+t++s
Manes.02G140000.1.p 132 SGTTTCQDCGNQAKKDCSYRRCRTCCKSRGYDCSTHVKSTWVPAARRRERQLMAAAAGGGDGSSGSTTGIKKPRLV-NSQTTTNSHTSTS 220
7899************************************************999999999999999999999986.7788899999*** PP
DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+++++++++tss lP +v+++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqG+e
Manes.02G140000.1.p 221 NTTPPRSFDTSSshqdasfketLPGNVRAQAVFKCVRVTAVDDGEDEYAYQAVVNIGGHVFKGFLYDQGVE 291
**********999********************************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MGMFVVTPAS FNHHHQHQHE SSINLATDPI HGSNAAATAL GVGVGVGVIP LLTAAPCLAP 60
QNMDDQDLLN NGRNKMGGLQ FWQNQSSHHH TLSNIKRTNA SILDHDNSPA NLLQSGNNNS 120
SGGGIGGNSA SSGTTTCQDC GNQAKKDCSY RRCRTCCKSR GYDCSTHVKS TWVPAARRRE 180
RQLMAAAAGG GDGSSGSTTG IKKPRLVNSQ TTTNSHTSTS NTTPPRSFDT SSSHQDASFK 240
ETLPGNVRAQ AVFKCVRVTA VDDGEDEYAY QAVVNIGGHV FKGFLYDQGV EGRDGFPNIS 300
ELHLGSANSG GGGGDGVRNG ASSSPIIDPS DVYGASGGGL LGGLSYGNPI N*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 1e-69 | Lateral root primordium (LRP) protein-related |
