PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G140000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

SRS

Protein Properties

Length: 352aa MW: 36498.9 Da PI: 7.5965

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G140000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.2	8.9e-68	132	291	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 sgt++CqdCGnqakkdC+++RCRtCCksrg+dC+thvkstWvpaa+rrerq ++aaa + +s ++ k++r ++++++ s+t++s Manes.02G140000.1.p 132 SGTTTCQDCGNQAKKDCSYRRCRTCCKSRGYDCSTHVKSTWVPAARRRERQLMAAAAGGGDGSSGSTTGIKKPRLV-NSQTTTNSHTSTS 220 7899**********************************************999999999999999999999986.7788899999* PP DUF702 93 saeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++++++++tss lP +v+++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqG+e Manes.02G140000.1.p 221 NTTPPRSFDTSSshqdasfketLPGNVRAQAVFKCVRVTAVDDGEDEYAYQAVVNIGGHVFKGFLYDQGVE 291 ********999******************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.9E-62	134	291	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.6E-27	136	178	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.0E-29	243	290	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MGMFVVTPAS FNHHHQHQHE SSINLATDPI HGSNAAATAL GVGVGVGVIP LLTAAPCLAP 60 QNMDDQDLLN NGRNKMGGLQ FWQNQSSHHH TLSNIKRTNA SILDHDNSPA NLLQSGNNNS 120 SGGGIGGNSA SSGTTTCQDC GNQAKKDCSY RRCRTCCKSR GYDCSTHVKS TWVPAARRRE 180 RQLMAAAAGG GDGSSGSTTG IKKPRLVNSQ TTTNSHTSTS NTTPPRSFDT SSSHQDASFK 240 ETLPGNVRAQ AVFKCVRVTA VDDGEDEYAY QAVVNIGGHV FKGFLYDQGV EGRDGFPNIS 300 ELHLGSANSG GGGGDGVRNG ASSSPIIDPS DVYGASGGGL LGGLSYGNPI N*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MGMFVVTPAS FNHHHQHQHE SSINLATDPI HGSNAAATAL GVGVGVGVIP LLTAAPCLAP  60
QNMDDQDLLN NGRNKMGGLQ FWQNQSSHHH TLSNIKRTNA SILDHDNSPA NLLQSGNNNS  120
SGGGIGGNSA SSGTTTCQDC GNQAKKDCSY RRCRTCCKSR GYDCSTHVKS TWVPAARRRE  180
RQLMAAAAGG GDGSSGSTTG IKKPRLVNSQ TTTNSHTSTS NTTPPRSFDT SSSHQDASFK  240
ETLPGNVRAQ AVFKCVRVTA VDDGEDEYAY QAVVNIGGHV FKGFLYDQGV EGRDGFPNIS  300
ELHLGSANSG GGGGDGVRNG ASSSPIIDPS DVYGASGGGL LGGLSYGNPI N*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G140000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021604795.1	0.0	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	1e-81	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2C9WDR0	0.0	A0A2C9WDR0_MANES; Uncharacterized protein
STRING	cassava4.1_010794m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-69	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Manes.02G140000.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]