PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G131200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 686aa    MW: 75800.6 Da    PI: 9.0496
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G131200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07590639147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Manes.02G131200.1.p 590 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 639
                          6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.08E-6399487IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.733585644IPR017930Myb domain
SMARTSM007172.0E-7589642IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10590640IPR009057Homeodomain-like
SuperFamilySSF466891.35E-15591672IPR009057Homeodomain-like
CDDcd116605.62E-17591641No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPTP RATRSARRRG SLKKKIGQNQ MCAFDLLAVV AGNLLLEKGS  60
PSSSDAFADK DHCLVVNNTV KNEWQDEEKN MKVEAHDQGN PARSFFVSEL VSQGNDQNCS  120
SKELLFAQNE HNLGLASTLA ASECAERFDP KLDSKSKNEI GTFASKVEVD SSGYREFNDC  180
KLEGSTKDLI KDESNKSGKV QIGTMANICC FEDPVDWDGK PHALASSDSS AKVPLWGNNI  240
SRSSYPTNGD SINVDNRDDD ENSSGCTHPS KKKKLFRPAP HIGGRRIRKI LASKYWKVAP  300
RLKDVTISNA DGADSMPLYH KRKNYYKYQR SERLYPFKKR KHVFCASESN SEGGICNEFI  360
SNSLQKGSDG DAAGSTPKKH GAIGVSSSVA CQHSSFRPRD SHVKLRIKSF KVPELFIEIP  420
ESATVGLLKR TVMEAVTAIL GGGLRVGVLL QGKRVCDDNK TLLQTGICHN NRLNALGFSL  480
EPNCSQSPHS LCPGDSPFLI DTPQPVSRYP PVPSLAQKTT CAASAEPHGT DLENLIESDH  540
DSAPSSTDVD KTRNDAKAVI PLPEMNIEAL AMVPVHRKSK QSEIVQRRIR RPFSVAEVEA  600
LVQAVEKLGT GRWRDVKLRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL  660
DRVLAAHAYW SQQQAKQQPE TCLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-585746851112Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320340KRKNYYKYQRSERLYPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G131200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604651.10.0telomere repeat-binding protein 5-like
SwissprotQ6R0E31e-135TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2C9WDF80.0A0A2C9WDF8_MANES; Uncharacterized protein
STRINGcassava4.1_004051m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-118TRF-like 2