PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G118800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 708aa    MW: 76431.6 Da    PI: 5.628
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G118800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06277297526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd C +aHg
  Manes.02G118800.1.p 277 PCPEFRK-GSCRQGDACEYAHG 297
                          8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.37E-1532148IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.05173143IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001373103IPR002110Ankyrin repeat
PROSITE profilePS500888.6037397IPR002110Ankyrin repeat
PfamPF127967.9E-1073142IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-1674151IPR020683Ankyrin repeat-containing domain
CDDcd002041.74E-1475148No hitNo description
SMARTSM002483.8E-4108140IPR002110Ankyrin repeat
PROSITE profilePS5008812.636108143IPR002110Ankyrin repeat
SMARTSM003561.0E-4272298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662277299IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.118307331IPR000571Zinc finger, CCCH-type
SMARTSM0035652307330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MCSGSKKITH TGFTMENEFQ KRDGFFCDLS VLLELSASND LIGFKREIEG GRDIDERGLW  60
YGRRIGSKRM GFEERTPLMI AALYGSKDVL NYILEMGCVD VNRSCGSDGA TALHCAAAGG  120
SASSLEVVKL LLDASADPNT VDADGNHASD LLVPFVGSDS NSRGKALELV LKGGCANDES  180
CVVVDQNPNE MDGQDKQEVS TPILSKDGTE KKEYPVDVTL PDIKNGIYGT DEFRMYTFKV  240
KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGSCRQGD ACEYAHGIFE  300
CWLHPAQYRT RLCKDEINCT RRVCFFAHKP EELRPLYAST GSAVPSPRSF SANGSALDIG  360
SVSPLALGSP AVLIPATSTP PLTPSGSSSP MGGWPNQSNI VPPTLHLPGS RLKSALCARD  420
MDLDMELLGL DNHHRWQQQL MDEISGLSSP SNWNNGLSTG SAFAVSGDRT AELNRIGGVK  480
PTNLEDIFGS LDPSILPQLQ GLSVDASASQ LQSPTGIQMH QNINQKLRSG YPTNFSSSPV  540
RTSSFGIDPS GAAAAAAAVL NSRAAAFAKR SQSFIERSAV NRHPGFSSPT SSATVMPSNI  600
SDWGSPDGKL DWGIQGEELN KLRKSASFGI RSNASSLAAA AVSLPATLDE PDVSWVQSLV  660
KDTSPLKSGH LGFEEQQQQQ CHTNTGSSEM LPAWMEQLYI EQEQMVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G118800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604126.10.0zinc finger CCCH domain-containing protein 66-like
RefseqXP_021604127.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2C9WDI50.0A0A2C9WDI5_MANES; Uncharacterized protein
STRINGcassava4.1_002672m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein