PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G117400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 796aa MW: 91697.6 Da PI: 7.7622

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G117400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.9	1.3e-31	89	181	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn+YA++vGFs+r+s s++s+r+g i++r fvC keg+r +++k+ +++ +r+raetr+gCka+l+vk +++g+w+v+++ +eHnHe Manes.02G117400.1.p 89 FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRVDKDKTarpDTRVKRPRAETRVGCKAMLVVKIRDSGRWVVSTFLKEHNHE 178 9****************************************999998899999********************************* PP FAR1 89 lap 91 l+p Manes.02G117400.1.p 179 LVP 181 *86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-29	89	181	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-31	302	394	IPR018289	MULE transposase domain
Pfam	PF04434	3.2E-11	570	616	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.066	582	618	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.8E-9	593	620	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence Send to blast
MELEPLSMTN EVIEFDMMGL GDDNVAIHQH PDHQHMEDED EDEGGEKQQG LLHNSHNSTA 60 SELHIPQGDT NLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSMSRRSR RDGAIIQRSF 120 VCAKEGFRVD KDKTARPDTR VKRPRAETRV GCKAMLVVKI RDSGRWVVST FLKEHNHELV 180 PPDKVHCLRS HRHVSGSAKS LIDTLQGAGI GPSGIMSALV KEYGGISNVG FTERDCRNYM 240 RSSRQRALGG DTQLLLDYLR NKQAENPEFF YAVQGDEDQC MSNIFWADPK ARTNYTYFGD 300 TVTFDTTYRS NRYRLPFAPF TGVNHHGQPL LFGCALLINE SEGSFIWLFK TWLMAMSGRP 360 PVSITTDHDR VIRLAVTQVF PETRHRFCKW HIFKECQEKL SHVFSEHHSF EAELHKCVNL 420 TESIEEFESC WVSLIDRYHL REHEWLQAVY ADRRQWVPAY LRDAFFAEMS TMQRSDGINS 480 YFDGYINAST TLQFFVKQYE KALESRYEKE IKADYDTINT TPVLKTPSPM ERQASEMYTR 540 KLFMKFQEEL VETLTFLATK AENEVATAIY RVTKFEDNRK AYYVNFNVHE VKATCSCQMF 600 EFSGLLCRHI LTVFRVTNVL TLPPSYVLKR WTRNAKSGVI LEEHTNALHS SSQESLTRRY 660 NSLRREALKY VDEGTKSFEI YNVAMDALQE AANKVALAKK TGGKVTIANG ASIKDHPNQG 720 RQANNTYGTQ QWSLEQSASM DDQDKKIQKL QRKLERSRRK CEVYRTNLLS VLKDIEDQKL 780 QLTVKVKNIK LGMKE*

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence Send to blast

MELEPLSMTN EVIEFDMMGL GDDNVAIHQH PDHQHMEDED EDEGGEKQQG LLHNSHNSTA  60
SELHIPQGDT NLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSMSRRSR RDGAIIQRSF  120
VCAKEGFRVD KDKTARPDTR VKRPRAETRV GCKAMLVVKI RDSGRWVVST FLKEHNHELV  180
PPDKVHCLRS HRHVSGSAKS LIDTLQGAGI GPSGIMSALV KEYGGISNVG FTERDCRNYM  240
RSSRQRALGG DTQLLLDYLR NKQAENPEFF YAVQGDEDQC MSNIFWADPK ARTNYTYFGD  300
TVTFDTTYRS NRYRLPFAPF TGVNHHGQPL LFGCALLINE SEGSFIWLFK TWLMAMSGRP  360
PVSITTDHDR VIRLAVTQVF PETRHRFCKW HIFKECQEKL SHVFSEHHSF EAELHKCVNL  420
TESIEEFESC WVSLIDRYHL REHEWLQAVY ADRRQWVPAY LRDAFFAEMS TMQRSDGINS  480
YFDGYINAST TLQFFVKQYE KALESRYEKE IKADYDTINT TPVLKTPSPM ERQASEMYTR  540
KLFMKFQEEL VETLTFLATK AENEVATAIY RVTKFEDNRK AYYVNFNVHE VKATCSCQMF  600
EFSGLLCRHI LTVFRVTNVL TLPPSYVLKR WTRNAKSGVI LEEHTNALHS SSQESLTRRY  660
NSLRREALKY VDEGTKSFEI YNVAMDALQE AANKVALAKK TGGKVTIANG ASIKDHPNQG  720
RQANNTYGTQ QWSLEQSASM DDQDKKIQKL QRKLERSRRK CEVYRTNLLS VLKDIEDQKL  780
QLTVKVKNIK LGMKE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G117400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021605158.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2C9WFP8	0.0	A0A2C9WFP8_MANES; Uncharacterized protein
STRING	POPTR_0011s14880.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Manes.02G117400.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]