PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G113100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C2H2 | ||||||||
Protein Properties | Length: 221aa MW: 22315.3 Da PI: 6.9487 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00024 | 77 | 98 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk F ++ H+r H Manes.02G113100.1.p 77 VCALCGKKFGSWKGVFGHMRAH 98 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MADSPPPPPV PSSSSSSSTT PPSTVQVGPG GSSVGGGSGE GSSQKKRTGG NNNQGGEEGG 60 PKRKKRGEID TPVSEPVCAL CGKKFGSWKG VFGHMRAHPE RDWRGAFPPP KGASATMRIS 120 NPEIQQQLAS TLFALGSETL AKMRQDSITT HGGAGAGAGA SSSRAGEIDL NREPREHAGP 180 PSSTTPASTN PPPQGGGSGF DLNLPPPPEN ADEEDDSKNA * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 44 | 65 | KKRTGGNNNQGGEEGGPKRKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G113100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021676667.1 | 1e-61 | uncharacterized protein LOC110662098 | ||||
TrEMBL | A0A2C9WCW9 | 1e-154 | A0A2C9WCW9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_022775m | 1e-154 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10202 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35610.1 | 1e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G113100.1.p |