PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G094900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 86aa    MW: 9627.6 Da    PI: 9.5777
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G094900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-091558344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +WT+   +++ +a +++ ++   +W  +a+ +g g++++++k ++
  Manes.02G094900.1.p 15 SWTPKQNKQFEKALALYDKDtpdRWQNVAKAVG-GKSPEEVKRHY 58
                         7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.2921165IPR017884SANT domain
SMARTSM007171.3E-81264IPR001005SANT/Myb domain
SuperFamilySSF466893.1E-131470IPR009057Homeodomain-like
PfamPF002494.5E-81558IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-61568IPR009057Homeodomain-like
CDDcd001674.80E-71658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MASNSLSSSR NSASSWTPKQ NKQFEKALAL YDKDTPDRWQ NVAKAVGGKS PEEVKRHYEI  60
LINDVREIES GRVPFPNYRS GENTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-35680175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G094900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021604243.14e-57protein RADIALIS-like 3
SwissprotQ1A1732e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2C9WCF04e-56A0A2C9WCF0_MANES; Uncharacterized protein
STRINGcassava4.1_020357m7e-57(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-35RAD-like 1