PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G093800.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 340aa    MW: 37331.3 Da    PI: 8.93
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G093800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.11.1e-33123178359
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          +vrY+eCl+NhAas+Gg +vDGCgEfmps geegt++alkCaAC+CHRnFHR+e + 
  Manes.02G093800.3.p 123 SVRYRECLRNHAASMGGLVVDGCGEFMPS-GEEGTPEALKCAACECHRNFHRKEIDG 178
                          69**************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.6E-31124176IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-22124177IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-30125176IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.505126175IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.5E-29266337IPR009057Homeodomain-like
SuperFamilySSF466897.48E-19268336IPR009057Homeodomain-like
PROSITE profilePS500718.697273337IPR001356Homeobox domain
TIGRFAMsTIGR015658.8E-29276332IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MELKGQDKET GMPSSLGYNL PHIDSSHKVP PASVISALGE RKRDHLHQTA APQTLEHHPL  60
PLNLQHQSLE PTRESDVIPD PAPIAATGAT SSTPTPSTSI SRSPPPPPPA AASTIITTES  120
ISSVRYRECL RNHAASMGGL VVDGCGEFMP SGEEGTPEAL KCAACECHRN FHRKEIDGEP  180
PQCTPNCFYK NNNQRNTLAL PQQLPTSLPP PQASLHHRYP HGFSITAPTI PTAPIMMTFG  240
GGGGSVGAES SSEDLNIFQS NLQAARSMRP SSLKNKRFRT KFTQEQKDKM MEFAERLGWK  300
IQKQDEQEVQ QFCSRVGVKR KVFKVWMHNN KQSMKKKQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-242763331875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G093800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1487352e-44EF148735.1 Populus trichocarpa x Populus deltoides clone WS0137_D14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599438.10.0zinc-finger homeodomain protein 6-like
RefseqXP_021599446.10.0zinc-finger homeodomain protein 6-like
RefseqXP_021599456.10.0zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW79e-65ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A251LG840.0A0A251LG84_MANES; Uncharacterized protein
STRINGcassava4.1_032899m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.19e-58homeobox protein 33