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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G093800.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ZF-HD | ||||||||
Protein Properties | Length: 340aa MW: 37331.3 Da PI: 8.93 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 107.1 | 1.1e-33 | 123 | 178 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eCl+NhAas+Gg +vDGCgEfmps geegt++alkCaAC+CHRnFHR+e + Manes.02G093800.3.p 123 SVRYRECLRNHAASMGGLVVDGCGEFMPS-GEEGTPEALKCAACECHRNFHRKEIDG 178 69**************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.6E-31 | 124 | 176 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-22 | 124 | 177 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.9E-30 | 125 | 176 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.505 | 126 | 175 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-29 | 266 | 337 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.48E-19 | 268 | 336 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.697 | 273 | 337 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 8.8E-29 | 276 | 332 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MELKGQDKET GMPSSLGYNL PHIDSSHKVP PASVISALGE RKRDHLHQTA APQTLEHHPL 60 PLNLQHQSLE PTRESDVIPD PAPIAATGAT SSTPTPSTSI SRSPPPPPPA AASTIITTES 120 ISSVRYRECL RNHAASMGGL VVDGCGEFMP SGEEGTPEAL KCAACECHRN FHRKEIDGEP 180 PQCTPNCFYK NNNQRNTLAL PQQLPTSLPP PQASLHHRYP HGFSITAPTI PTAPIMMTFG 240 GGGGSVGAES SSEDLNIFQS NLQAARSMRP SSLKNKRFRT KFTQEQKDKM MEFAERLGWK 300 IQKQDEQEVQ QFCSRVGVKR KVFKVWMHNN KQSMKKKQM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-24 | 276 | 333 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G093800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148735 | 2e-44 | EF148735.1 Populus trichocarpa x Populus deltoides clone WS0137_D14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021599438.1 | 0.0 | zinc-finger homeodomain protein 6-like | ||||
Refseq | XP_021599446.1 | 0.0 | zinc-finger homeodomain protein 6-like | ||||
Refseq | XP_021599456.1 | 0.0 | zinc-finger homeodomain protein 6-like | ||||
Swissprot | Q9ZPW7 | 9e-65 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A251LG84 | 0.0 | A0A251LG84_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_032899m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 9e-58 | homeobox protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G093800.3.p |