PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G087400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 402aa    MW: 46061.5 Da    PI: 6.3301
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G087400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.81.3e-36161062101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+ye+++d+++++++sws++g sfvv+++ efa+++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF++++Fk+g++
  Manes.02G087400.1.p  16 FLIKTYEMVDDPSTNSVVSWSSSGCSFVVWNPPEFAQDLLPSYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFKRGQR 96 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  Manes.02G087400.1.p  97 HLLSNIRRRK 106
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-39799IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-6212105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.33E-3512105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.1E-3216105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-201639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-205466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDGSQGSSTS NAPAPFLIKT YEMVDDPSTN SVVSWSSSGC SFVVWNPPEF AQDLLPSYFK  60
HNNFSSFVRQ LNTYGFRKID PDQWEFANEE FKRGQRHLLS NIRRRKPIHS HSMQNQVNSP  120
LTKTEKIEYE EKIKQLTKDK NLLQLQLQRH ETEKQAFECQ IMPLGERLKR LESRQNQLVS  180
FLAQLAKKPG FASILMRQPE YNNKKRRLLE LDHLNGDYYS EEKHSSRSSK DSTMNFELVK  240
KLDSSIKCIE DLFYGAGEAF TQDMHDFALA SQPSAIVVRE LSTSSIDGEA CSSLHSMEDI  300
PSSPELPQCI NHVNSPKIHP EFPVFKAVKE SELETKDSST PTGANDNFWE YFLTEAPGSS  360
STQDFEPGFE RRTSEERLRW SFNTMNDLTQ HMKHLAPAER V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-25310517129Heat shock factor protein 1
5d5v_B1e-25310517129Heat shock factor protein 1
5d5v_D1e-25310517129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G087400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603551.10.0heat stress transcription factor A-4a-like
TrEMBLA0A2C9WCJ90.0A0A2C9WCJ9_MANES; Uncharacterized protein
STRINGcassava4.1_009017m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141001620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.19e-70heat shock transcription factor A4A