PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G085500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28453.1 Da    PI: 9.8364
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G085500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.6e-312877150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Manes.02G085500.1.p 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 77
                         79***********************************************8 PP
2K-box110.91.3e-36961924100
                K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                          s+  s++ea+++ +qqe++kL+++i+++q+ +Rh+lGe L++L++keL++Le +Lek++++iRskKne+l+++ie++qk+e elq++n++
  Manes.02G085500.1.p  96 SNPASASEANTQFYQQESSKLRRQIREIQNLNRHILGEALSTLTFKELKNLEGRLEKGISRIRSKKNEMLFAEIEYMQKREIELQNDNMY 185
                          3444599*********************************************************************************** PP

                K-box  94 Lrkklee 100
                          Lr+k++e
  Manes.02G085500.1.p 186 LRAKIAE 192
                          ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.3752080IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-412079IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-332193IPR002100Transcription factor, MADS-box
CDDcd002651.02E-452197No hitNo description
PROSITE patternPS0035002276IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-332242IPR002100Transcription factor, MADS-box
PfamPF003199.3E-272976IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-334257IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-335778IPR002100Transcription factor, MADS-box
PfamPF014863.3E-26103190IPR002487Transcription factor, K-box
PROSITE profilePS5129715.128106196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
IATTEFPNQE PDQGPSLRKT GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA  60
EVALIVFSSR GRLYEYANNS VRATIDRYKK ASADSSNPAS ASEANTQFYQ QESSKLRRQI  120
REIQNLNRHI LGEALSTLTF KELKNLEGRL EKGISRIRSK KNEMLFAEIE YMQKREIELQ  180
NDNMYLRAKI AENERAQQQQ QQTSLMPGGS VYESVPSQAY DRNFIPVNLL EPNHHYSRPD  240
HTALQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-202192273Myocyte-specific enhancer factor 2B
1tqe_Q2e-202192273Myocyte-specific enhancer factor 2B
1tqe_R2e-202192273Myocyte-specific enhancer factor 2B
1tqe_S2e-202192273Myocyte-specific enhancer factor 2B
6c9l_A2e-202192273Myocyte-specific enhancer factor 2B
6c9l_B2e-202192273Myocyte-specific enhancer factor 2B
6c9l_C2e-202192273Myocyte-specific enhancer factor 2B
6c9l_D2e-202192273Myocyte-specific enhancer factor 2B
6c9l_E2e-202192273Myocyte-specific enhancer factor 2B
6c9l_F2e-202192273Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G085500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021598603.10.0agamous-like MADS-box protein AGL1
SwissprotQ93XH41e-136MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A2C9WC270.0A0A2C9WC27_MANES; Uncharacterized protein (Fragment)
STRINGcassava4.1_022897m1e-162(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-117MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]