PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G081200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 657aa MW: 74719.2 Da PI: 5.6438

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G081200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.6	8.3e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgk Manes.02G081200.1.p 6 LPPGFRFHPTDEELVAYYLKRKINGHKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGK 94 79**************************.99***********6434555777**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v s +++ vg+kktLv+y+grap+g +t Wvmheyrl Manes.02G081200.1.p 95 DRKVNS-HTRPVGMKKTLVYYRGRAPHGARTGWVMHEYRL 133 *9.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.457	6	156	IPR003441	NAC domain
Pfam	PF02365	5.0E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING HKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS HTRPVGMKKT LVYYRGRAPH 120 GARTGWVMHE YRLDERECET ASGLQDAYAL CRVFKKTANI PKIGEHFAST SNQMASELSS 180 SMELYSEGRC EDFESSNYPM PLDTCSPSIA NNGSPLHLGE TRDGKWGQCL SEEAFGFSSP 240 SFSGYGNVPY YPPSKVDIAL ECARLQHRFS LPPLEVEDFP QVGLTDLRVM HSNPTYDQNT 300 NSTDILQEIL SVAHASQELI NQSNLQDTWG GNYSADNNDF TFIAGKDAHG HLYSDICSTR 360 CMDKSWEDPN LRSIEIGNLD EDFKTGRMIE NLRWVGMSNE ELEKSFMEEH KVVPIENIST 420 FQTRKENEFQ GEKGDCLGFN GTDDYSLEFI NDDPNGNFID EGNVDDLASS PSFEVVEEIK 480 VNHGMFVSTR QAAETFFHRL VPSQTVKIHL NPEMTDSFSI QKVDMQGALD ETTRSYNTFS 540 RESKFLEISK LIIHPWKTMA TTVICMILII LMRFFEVGEN VGNENKVMRG FREIGNVRPK 600 KKEERNRCWN EKTEKDLVVS IRGRNQFSVL LKKLGVFLTI SLAVCTMWVN HVILAS*

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING HKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS HTRPVGMKKT LVYYRGRAPH  120
GARTGWVMHE YRLDERECET ASGLQDAYAL CRVFKKTANI PKIGEHFAST SNQMASELSS  180
SMELYSEGRC EDFESSNYPM PLDTCSPSIA NNGSPLHLGE TRDGKWGQCL SEEAFGFSSP  240
SFSGYGNVPY YPPSKVDIAL ECARLQHRFS LPPLEVEDFP QVGLTDLRVM HSNPTYDQNT  300
NSTDILQEIL SVAHASQELI NQSNLQDTWG GNYSADNNDF TFIAGKDAHG HLYSDICSTR  360
CMDKSWEDPN LRSIEIGNLD EDFKTGRMIE NLRWVGMSNE ELEKSFMEEH KVVPIENIST  420
FQTRKENEFQ GEKGDCLGFN GTDDYSLEFI NDDPNGNFID EGNVDDLASS PSFEVVEEIK  480
VNHGMFVSTR QAAETFFHRL VPSQTVKIHL NPEMTDSFSI QKVDMQGALD ETTRSYNTFS  540
RESKFLEISK LIIHPWKTMA TTVICMILII LMRFFEVGEN VGNENKVMRG FREIGNVRPK  600
KKEERNRCWN EKTEKDLVVS IRGRNQFSVL LKKLGVFLTI SLAVCTMWVN HVILAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-56	1	162	15	174	NAC domain-containing protein 19
3swm_B	8e-56	1	162	15	174	NAC domain-containing protein 19
3swm_C	8e-56	1	162	15	174	NAC domain-containing protein 19
3swm_D	8e-56	1	162	15	174	NAC domain-containing protein 19
3swp_A	8e-56	1	162	15	174	NAC domain-containing protein 19
3swp_B	8e-56	1	162	15	174	NAC domain-containing protein 19
3swp_C	8e-56	1	162	15	174	NAC domain-containing protein 19
3swp_D	8e-56	1	162	15	174	NAC domain-containing protein 19
4dul_A	7e-56	1	162	12	171	NAC domain-containing protein 19
4dul_B	7e-56	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G081200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605139	0.0	KR605139.1 Manihot esculenta NAC transcription factors 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021596205.1	0.0	NAC domain-containing protein 86-like
Refseq	XP_021596213.1	0.0	NAC domain-containing protein 86-like
TrEMBL	A0A0M4FKW2	0.0	A0A0M4FKW2_MANES; NAC transcription factors 1
STRING	cassava4.1_003233m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-166	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	Manes.02G081200.1.p

Publications ? help Back to Top
Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631]