PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G080700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 497aa    MW: 54533.2 Da    PI: 7.3406
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G080700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-1670114147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r rWT++E++++++a k++G   W++I +++g ++t+ q++s+ qk+
  Manes.02G080700.1.p  70 RERWTEDEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 114
                          78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-1664118IPR009057Homeodomain-like
PROSITE profilePS5129420.88565119IPR017930Myb domain
TIGRFAMsTIGR015575.0E-1768117IPR006447Myb domain, plants
SMARTSM007177.1E-1369117IPR001005SANT/Myb domain
PfamPF002491.4E-1370113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-970110IPR009057Homeodomain-like
CDDcd001675.63E-1072115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MVGGLVISTA MAVQDQGGEA QSNTALPAGN GISLNAGLHA VTGPQLKEQF TCGNDYSPKV  60
RKPYTITKQR ERWTEDEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKVVR  120
EASGNTTSSV EPIEIPPPRP KRKPMRPYPR KMVHPLNKDT SILEQPLQSS SPHVSVSEQE  180
NQSPKSVLSA VGSDALGSID SNTPNSSSSP VSCAGCCNSA KFTFCEPNLT PEDHGCASPA  240
TVTATVPDEQ SPKVQKLDLF PRENVFSEED LVGETSSWSF KLFGRTVLVS ECPGPSSPTI  300
ENSKLSPLAT NDGKHVQPLP LNFMGTELQH ENRECTWNHF STHDLPGALC YLQFQKEKSN  360
SIGAGSSAPV PLYAICGGVP FHFHKRETMK IHLDPEEIQD KEIHKEGSWT GSNSGSVNGG  420
ENVDKNIDGE TQSRQLPYEG KESYPVLELK TSEKTATSSK CLKGFVPYKK RKAERDCQSS  480
SITGEEREER RIRLCL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G080700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021596014.10.0protein REVEILLE 1-like
TrEMBLA0A2C9WDI30.0A0A2C9WDI3_MANES; Uncharacterized protein
STRINGcassava4.1_032318m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-57MYB_related family protein