PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G080200.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 240aa MW: 27205.6 Da PI: 7.1821

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G080200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.5	1.1e-28	75	162	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Manes.02G080200.2.p 75 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTP 162 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-26	75	162	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MVGTVELEDS KACDESEIGV TSADEDFQQD QDDKVDKQSL GKDAILDGVP SAGTVPADEP 60 YVGQEFESEA AAHAFYNAYA TRVGFIIRVS KLSRSRRDGS AIGRALVCNK EGYRMPDKRE 120 KIVRQRAETR VGCRAMILVR KVSSGKWVVT KFVKEHTHPL TPGKGRRDCI YDQYPNEHDK 180 IRELSQQLAI EKKRAATYKR HLELIFEQIE EHNESLSKKI QHIVDSVREM ENKEQQNRV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G080200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021605725.1	1e-178	protein FAR1-RELATED SEQUENCE 6-like isoform X2
TrEMBL	A0A2C9WCD5	1e-177	A0A2C9WCD5_MANES; Uncharacterized protein
STRING	cassava4.1_015065m	1e-178	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-101	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Manes.02G080200.2.p