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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G064100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 102aa MW: 11537.7 Da PI: 4.1283 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.3 | 1e-09 | 13 | 56 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT e ++l+ da + + ++ +W+ Ia+ +g + t++++k+ + Manes.02G064100.1.p 13 NWTLEQHKLFEDALAIYDKDtpdRWSNIAKAVG-RTTEEEVKLQF 56 8********************************.99999999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.6E-7 | 10 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.2E-10 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.38E-6 | 13 | 56 | No hit | No description |
Pfam | PF00249 | 4.7E-7 | 13 | 56 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MASNASVQSQ NSNWTLEQHK LFEDALAIYD KDTPDRWSNI AKAVGRTTEE EVKLQFEILV 60 SDISDIESDK VPLPNYEDEG IIREETTTIN NEQKIRGILQ N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-26 | 5 | 80 | 2 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G064100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605598.1 | 5e-65 | protein RADIALIS-like 6 | ||||
Swissprot | Q1A173 | 1e-27 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2C9WBD9 | 2e-67 | A0A2C9WBD9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028792m | 3e-64 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 5e-28 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G064100.1.p |