![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.02G058900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28980.6 Da PI: 9.0484 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.3 | 9.6e-20 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++vk++G g+W+++ar g++R++k+c++rw +yl Manes.02G058900.1.p 13 KGPWTPEEDKLLSEYVKLHGEGRWTSVARGSGLNRSGKSCRLRWVNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ Manes.02G058900.1.p 66 RGQITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 110 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.998 | 8 | 64 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.20.1000.10 | 1.1E-4 | 9 | 22 | No hit | No description |
SuperFamily | SSF46689 | 2.21E-31 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-17 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-18 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.50E-12 | 15 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-23 | 23 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.195 | 65 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 68 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-9 | 70 | 111 | No hit | No description |
Gene3D | G3DSA:1.20.1000.10 | 1.1E-4 | 107 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MMDWGVVQQG WRKGPWTPEE DKLLSEYVKL HGEGRWTSVA RGSGLNRSGK SCRLRWVNYL 60 RPGLKRGQIT PQEEGIIIEL HALWGNKWST IARYLPGRTD NEIKNYWRTH FKKREKSSSH 120 KQEKRKAQVL NKKLQLQQQQ EQQQQQQLGD DKMKAINFTS EGKIHEAQEK QEMAFMGPDL 180 ESQCLPVMYQ DIPSWADFMV EDGVLWGGLW NLDDQVDHAS NCSKIAKQNQ ATAFSFAGGS 240 DNTYSSAGGY IF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 13 | 114 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.02G058900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021605692.1 | 0.0 | transcription factor WER | ||||
TrEMBL | A0A2C9WBD7 | 0.0 | A0A2C9WBD7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029259m | 1e-156 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G30210.1 | 2e-74 | myb domain protein 121 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.02G058900.1.p |