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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G049200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 407aa MW: 44960.4 Da PI: 4.3631 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.5e-19 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Manes.02G049200.1.p 45 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 94 789******.7*********33....35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.03E-31 | 44 | 101 | No hit | No description |
SuperFamily | SSF54171 | 3.6E-19 | 45 | 102 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.599 | 45 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-36 | 45 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-13 | 45 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-27 | 45 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-8 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-8 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MGRKRKAVEA VEDKNSSEGA MAWDEMVKEA AEVAALGGVR RARKRFVGVR QRPSGRWVAE 60 IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGSNTRTN FWPCSPSSST TPALPSKITN 120 LLLQRLKARN NSCPPSASSS SLPNQQEQQQ VEEYRAETTD FSDTQFTDFL NDPEDYTTCN 180 DNIDSTSSRA IDYMTRSLES CLTEKEDSGG RELDFDSKWG DDISQSYSGD VNNLEAEGED 240 GGNDEGEESI GALDFHFVDD VGSDCYYSPF EIAAEIEEPV EPETLGDEPS MLRAAMKRMK 300 YERKFSASLY AFNGIPECLR LKLGSGNVKG RESSAQLTKL RDACNKNKEN EKKAKEDNME 360 VKGKNQEENS QNSIEMGSSA SSSSLSNDGE LSLWSSLDLP PICFVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-13 | 38 | 101 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G049200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021603585.1 | 0.0 | ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A2C9WDA3 | 0.0 | A0A2C9WDA3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_008867m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-22 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G049200.1.p |