PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G047800.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 371aa MW: 42091.7 Da PI: 6.9254

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G047800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.5	2.1e-56	32	158	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL kv ++++ + ++i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdk Manes.02G047800.1.p 32 LPPGFRFHPTDEELITHYLSLKVLDNSFCA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATDSGYWKATGKDK 120 79***********************998.89***********888999******************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ ++lvg+kktLvfykgrapkg+kt+Wvmheyrle Manes.02G047800.1.p 121 EIYR-AKTLVGMKKTLVFYKGRAPKGTKTNWVMHEYRLE 158 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-64	29	182	IPR003441	NAC domain
PROSITE profile	PS51005	59.297	32	182	IPR003441	NAC domain
Pfam	PF02365	2.0E-29	33	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MVELLEQERF DQDLKGMQNN SMLCGDDEQM ELPPGFRFHP TDEELITHYL SLKVLDNSFC 60 ARAIGEVDLN KCEPWDLPWR AKMGEKEWYF FCVRDRKYPT GLRTNRATDS GYWKATGKDK 120 EIYRAKTLVG MKKTLVFYKG RAPKGTKTNW VMHEYRLEGK YSVYNLPKTA KNEWVICRVF 180 QKSSGGKKTH ITGLVRISSY GNELRPSSLL PPLMDSSPYN SETRTSGGDT SHVTCFSKPM 240 EHQNAMEDVF DSFDNPPFLL TCTSSSNISP ASILSSKTSL PNSSYSPQIS PSFSSLQYPD 300 PALMPEQSIL KMLLEDHRAN TKQNSKMELS ISPDISSVLI NPELMQRSFE HREAPPNSAG 360 PIDLDCLWSY *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MVELLEQERF DQDLKGMQNN SMLCGDDEQM ELPPGFRFHP TDEELITHYL SLKVLDNSFC  60
ARAIGEVDLN KCEPWDLPWR AKMGEKEWYF FCVRDRKYPT GLRTNRATDS GYWKATGKDK  120
EIYRAKTLVG MKKTLVFYKG RAPKGTKTNW VMHEYRLEGK YSVYNLPKTA KNEWVICRVF  180
QKSSGGKKTH ITGLVRISSY GNELRPSSLL PPLMDSSPYN SETRTSGGDT SHVTCFSKPM  240
EHQNAMEDVF DSFDNPPFLL TCTSSSNISP ASILSSKTSL PNSSYSPQIS PSFSSLQYPD  300
PALMPEQSIL KMLLEDHRAN TKQNSKMELS ISPDISSVLI NPELMQRSFE HREAPPNSAG  360
PIDLDCLWSY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	29	188	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	29	188	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	29	188	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	29	188	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	29	188	17	174	NAC domain-containing protein 19
3swm_B	2e-55	29	188	17	174	NAC domain-containing protein 19
3swm_C	2e-55	29	188	17	174	NAC domain-containing protein 19
3swm_D	2e-55	29	188	17	174	NAC domain-containing protein 19
3swp_A	2e-55	29	188	17	174	NAC domain-containing protein 19
3swp_B	2e-55	29	188	17	174	NAC domain-containing protein 19
3swp_C	2e-55	29	188	17	174	NAC domain-containing protein 19
3swp_D	2e-55	29	188	17	174	NAC domain-containing protein 19
4dul_A	2e-55	29	188	14	171	NAC domain-containing protein 19
4dul_B	2e-55	29	188	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G047800.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605197	0.0	KR605197.1 Manihot esculenta NAC transcription factors 59 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021599243.1	0.0	NAC domain-containing protein 79-like
Swissprot	Q9FLJ2	1e-132	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2C9WAW3	0.0	A0A2C9WAW3_MANES; Uncharacterized protein
STRING	cassava4.1_010869m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-123	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Manes.02G047800.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]