PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G047300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 368aa    MW: 40770.6 Da    PI: 7.8705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G047300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.8e-1779124147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+++G+ +W++Ia++++ gR++k+c++rw++ 
  Manes.02G047300.1.p  79 RGHWKPAEDAKLKELVALYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 124
                          899*****************************.***********996 PP
2Myb_DNA-binding53.27e-17131174146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          + ++++eE+e+l  a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Manes.02G047300.1.p 131 KSAFSEEEEEKLMTAHRVYGNK-WALIARLFP-GRTDNAVKNHWHV 174
                          5789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.77274125IPR017930Myb domain
SMARTSM007171.6E-1478127IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-2879172IPR009057Homeodomain-like
PfamPF002491.4E-1679124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2680132IPR009057Homeodomain-like
CDDcd001671.79E-1382123No hitNo description
PROSITE profilePS5129426.009126180IPR017930Myb domain
SMARTSM007171.9E-14130178IPR001005SANT/Myb domain
PfamPF002492.0E-14131173IPR001005SANT/Myb domain
CDDcd001677.37E-12133173No hitNo description
Gene3DG3DSA:1.10.10.608.7E-21133179IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
METFTHMAPY NICSCHTLNV HKGDHYMAFL SSPMPKCCTF SFGSNQNNDV EDKCNAGISL  60
ISDQESLMHH QQSSKLCARG HWKPAEDAKL KELVALYGPQ NWNLIAEKLQ GRSGKSCRLR  120
WFNQLDPRIN KSAFSEEEEE KLMTAHRVYG NKWALIARLF PGRTDNAVKN HWHVIMARKY  180
REQSFAYRRR KQTEAAKRRV EDGSSSATRE TAINVTETKS PYLCNAIITK PSLHFPLEGC  240
KGFCDVTSSE EAATSGTVLF VGSSNLLSLP HGSCPEQTPF DFFSGHKSYE ISSQNGTTFT  300
VSHNMQQSSN HHLSAGFSDS MASPTSRVSN CEPSSSSSIS SSDNNATCHF QTTISPPFID  360
FLGVGAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-35791797107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G047300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021605698.10.0transcription factor MYB105-like
TrEMBLA0A2C9WDH80.0A0A2C9WDH8_MANES; Uncharacterized protein
STRINGcassava4.1_028014m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-73myb domain protein 105