PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G045800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 402aa    MW: 45122.9 Da    PI: 5.9982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G045800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.17.2e-53181451128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+
  Manes.02G045800.1.p  18 MLPGFRFHPTDEELVGFYLKRKIQQQPLPI-ELIKQVDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDR 106
                          579***************************.89***************8888999*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  Manes.02G045800.1.p 107 PIYSSdGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 145
                          ****956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5817176IPR003441NAC domain
PROSITE profilePS5100556.95618176IPR003441NAC domain
PfamPF023651.0E-2520145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MKRIMEEKND VDKIEDAMLP GFRFHPTDEE LVGFYLKRKI QQQPLPIELI KQVDIYKYDP  60
WDLPKLATTG EKEWYFYCPR DRKYRNSARP NRVTGAGFWK ATGTDRPIYS SDGTKCIGLK  120
KSLVFYRGRA AKGIKTDWMM HEFRLPTLAE PSPPKKLLDK SLPPNDAWAI CRIFKKANSM  180
AQRALNISWV SQLSDTAASD ILNQGPQSTQ FISENISCTT EIGSVFQMCS NDLQQASSAN  240
FSALDISSYK PITTTVDKPS LFPVSNGDLP NNFMFSPIEM PAPAKCTIDA PMLVNHDLMV  300
DVNKASESMD YDGSQHQFNG FSISLHQDTQ GSVGAEDGET GLRKNPSGFH DNSQWENMQS  360
IGFPFSLPSN IPDDWKSNLP WDSPPCPSEM SSNYSANKCY T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5351793171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G045800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6052040.0KR605204.1 Manihot esculenta NAC transcription factors 66 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021603758.10.0protein FEZ-like
SwissprotQ9ZVH01e-102FEZ_ARATH; Protein FEZ
TrEMBLA0A2C9WAY90.0A0A2C9WAY9_MANES; Uncharacterized protein
STRINGcassava4.1_026973m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-101NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  2. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]