PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.02G042800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family RAV
Protein Properties Length: 322aa    MW: 37922.7 Da    PI: 9.1301
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.02G042800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-103279154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         s+++GV w + +g+W A+I        +k ++lg+++ ++eAa a+++a+ kl 
  Manes.02G042800.1.p 32 SKFRGVIWLR-SGKWGARIAFK-----YKAYWLGTYDREQEAAMAYDRAAIKLQ 79
                         79******99.7******9993.....5**********99**********9985 PP
2B369.25.4e-22151249187
                          EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                          f k+lt+ dv+  + + +pk++a e+            +++ ++s++lt+ d++ r W+++++y+k+ +++v+tkGW++F k n+Lk +D
  Manes.02G042800.1.p 151 FRKELTQTDVTHIKGFHIPKEHAMEYfpplagvnssggDENGNKSMELTFFDRHRRPWTFRYSYWKSTQTFVFTKGWRHFLKMNNLKPKD 240
                          889*****************************9999774444599********************************************* PP

                          EEEEEE-SS CS
                   B3  79 fvvFkldgr 87 
                           v F++ ++
  Manes.02G042800.1.p 241 CVFFYRCEQ 249
                          ****96542 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.69E-183290No hitNo description
PfamPF008473.4E-63278IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-163290IPR016177DNA-binding domain
PROSITE profilePS5103215.5933388IPR001471AP2/ERF domain
SMARTSM003806.8E-133394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-153389IPR001471AP2/ERF domain
PRINTSPR003673.1E-53445IPR001471AP2/ERF domain
PRINTSPR003673.1E-57090IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.3E-29145267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-24149248IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-21150246No hitNo description
PfamPF023622.0E-19151249IPR003340B3 DNA binding domain
SMARTSM010192.7E-13151264IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884151264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGEERNWDSR DVISANHPNT ENDSSCARGT SSKFRGVIWL RSGKWGARIA FKYKAYWLGT  60
YDREQEAAMA YDRAAIKLQR SDAPLNFPMS IYTIQETKFQ SQYSNEEILD MIKDKTYLSK  120
FSNYLADQSL LREYATMNLA HQQDISYQML FRKELTQTDV THIKGFHIPK EHAMEYFPPL  180
AGVNSSGGDE NGNKSMELTF FDRHRRPWTF RYSYWKSTQT FVFTKGWRHF LKMNNLKPKD  240
CVFFYRCEQQ RETQGRVFYM IDAQRCSVES DAVTWNIEKE KEAKKRANHE VDGEEKEPDN  300
ESVKLFGVQI SKRRPSFKLF F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-1714825011106DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.02G042800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595990.10.0AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A2C9WAT70.0A0A2C9WAT7_MANES; Uncharacterized protein
STRINGcassava4.1_030966m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16118910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.16e-57RAV family protein