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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G042500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 340aa MW: 37980.3 Da PI: 6.0814 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.6e-20 | 200 | 250 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f+ta eAaka+++a+ kl+g Manes.02G042500.1.p 200 HYRGVRQRP-WGKYAAEIRDP---NrKGSRVWLGTFDTAIEAAKAYDRAAFKLRG 250 7********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 199 | 259 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-23 | 200 | 259 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.25 | 200 | 258 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-14 | 200 | 250 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.66E-32 | 200 | 258 | No hit | No description |
SMART | SM00380 | 6.8E-38 | 200 | 264 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-13 | 201 | 212 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-13 | 240 | 260 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MATQSQVSSA LEIIKNHLLG DLLSPVRVSC SSSTSTSAST STTFLIDNVN TELWSSYSEP 60 DSSRASTSDS AFSIADYFRI NNIDDGFFEF EAKPQINDIA TTKSSDSTTH FEFHSQPQLF 120 SQSSNEFFDF ESKPQIVSQS NDDFFNLESE PRVPSVSSSS QINRKPSLKI SLPKKPEWIQ 180 FANPKPQPEQ RNLGVEEKRH YRGVRQRPWG KYAAEIRDPN RKGSRVWLGT FDTAIEAAKA 240 YDRAAFKLRG SKAILNFPLE AGKLNTCVND GNEGKRMRES EIVEGERKKV VKREEAEKDV 300 SLTMSSWTAV CDYGDLKEIM PLSPLSPHPS LGYPQLTVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-30 | 199 | 259 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G042500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021604656.1 | 0.0 | ethylene-responsive transcription factor 6-like | ||||
TrEMBL | A0A2C9WDD1 | 0.0 | A0A2C9WDD1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_012714m | 1e-127 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17490.1 | 7e-51 | ethylene responsive element binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G042500.1.p |