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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G042400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 333aa MW: 37061.3 Da PI: 6.8928 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.4e-21 | 188 | 238 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka+++a+ kl+g Manes.02G042400.1.p 188 HYRGVRQRP-WGKYAAEIRDP---NqKGTRVWLGTFDTAIEAAKAYDRAAFKLRG 238 7********.**********9...5456*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.5E-33 | 187 | 247 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-14 | 188 | 238 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-23 | 188 | 247 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-38 | 188 | 252 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.14E-31 | 188 | 246 | No hit | No description |
PROSITE profile | PS51032 | 24.171 | 188 | 246 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-13 | 189 | 200 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-13 | 228 | 248 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MASETQVASA LELIRQHLLG DLLSPVPTSS SSSTATNSLT SLQHPSSHCS QNSSSDSAIS 60 VSDYFIHDDF FEFERKPQII DLITPKSSAP TTSFEFGSRS QLSDDFFDFE ANSQIPQSSE 120 IESTIDLFYF NIKPQIHPPD SGFQTSRKPS LKISLPNKTN WIGFVKPDQK PVSSNLGIAA 180 AAAEEKRHYR GVRQRPWGKY AAEIRDPNQK GTRVWLGTFD TAIEAAKAYD RAAFKLRGSK 240 AILNFPLEAG KLNTRADERN DIDSRTKEGN ERKRTRETEN VEREAKKMTR REETETAFWC 300 NGNLDLNGGF NVAPLSPLSS HPQLGYPQLM VI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-29 | 187 | 247 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00437 | DAP | Transfer from AT4G17490 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G042400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021604658.1 | 0.0 | ethylene-responsive transcription factor 6-like | ||||
TrEMBL | A0A2C9WAP9 | 0.0 | A0A2C9WAP9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_032473m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17490.1 | 1e-70 | ethylene responsive element binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G042400.1.p |