PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

ERF

Protein Properties

Length: 231aa MW: 26017.4 Da PI: 5.0539

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G041500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.5	1.6e-18	60	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a++ ++g Manes.02G041500.1.p 60 PSYRGVRMRH-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALTIKG 110 57***999.******843...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.71E-34	60	120	No hit	No description
Pfam	PF00847	4.1E-13	60	110	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.44E-21	61	118	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	9.9E-33	61	119	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.472	61	118	IPR001471	AP2/ERF domain
SMART	SM00380	7.7E-40	61	124	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-10	62	73	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-10	84	100	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
METSLAMEYE AHNDIEPSSS SSSSSTDSSS FSKRHQELKN DDDERNKKLK ISTENAGRHP 60 SYRGVRMRHW GKWVSEIREP RKKSRIWLGT YPTAEMAARA HDVAALTIKG RSAHLNFPEL 120 SHELPRPASA SPKDIQAAAA LAAALNYKNK DHDQAEMESS QDSTTEASHQ DTQESLSSTS 180 KDHEDDAFID LPDLLLDISH QIDEFYCLSS WQVCETESGL WHEQPSLWEY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-17	59	118	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G041500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021603649.1	1e-170	ethylene-responsive transcription factor ERF038-like
Swissprot	Q8LBQ7	2e-57	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A2C9WAN9	1e-168	A0A2C9WAN9_MANES; Uncharacterized protein
STRING	cassava4.1_026245m	1e-169	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	9e-55	ERF family protein

Link Out ? help Back to Top
Phytozome	Manes.02G041500.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]