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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G035700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | YABBY | ||||||||
Protein Properties | Length: 212aa MW: 23226.4 Da PI: 7.2501 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 211.9 | 2.2e-65 | 12 | 175 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekees 91 s seq+Cyv+Cn C+t lavsvP t+lfk++tvrCGhC++ll vn++ + a h+++++ + ll e + ++n+ n+++ + Manes.02G035700.1.p 12 LSPSEQLCYVHCNICDTGLAVSVPCTTLFKTITVRCGHCANLLPVNMRGSILPSANPFHMGHNFFSPhnLLGEIPNPSSNFLINQINVND 101 6789****************************************9999999888888899999866535777777777777777777665 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s ++ ++e+p +p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+i fgl Manes.02G035700.1.p 102 LSVPNRG-----VIHDELPSPPVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGL 175 5444333.....45678898889******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.4E-66 | 14 | 175 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.63E-8 | 120 | 169 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.7E-4 | 124 | 168 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MSSSSTLSLD QLSPSEQLCY VHCNICDTGL AVSVPCTTLF KTITVRCGHC ANLLPVNMRG 60 SILPSANPFH MGHNFFSPHN LLGEIPNPSS NFLINQINVN DLSVPNRGVI HDELPSPPVI 120 NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP DISHREAFSA AAKNWAHFPH IQFGLMADQT 180 VKKTNMGQQE GEDVMMNDGF FGSANVGVSP Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G035700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021603453.1 | 1e-157 | axial regulator YABBY 1-like | ||||
Swissprot | O22152 | 9e-81 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A2C9WCW6 | 1e-156 | A0A2C9WCW6_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_012686m | 1e-157 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-79 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G035700.1.p |