PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.02G035400.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 358aa MW: 41564.4 Da PI: 6.7497

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.02G035400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.4	1.1e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPtdeelv++yL+kkv++k+++l +vik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nratk+g+Wkatg Manes.02G035400.2.p 7 VPPGFRFHPTDEELVDYYLRKKVASKRIDL-DVIKDVDLYKIEPWDLQElcKIGTeEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATG 95 69**************************.9***********954555552555*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +dk+++s +++l+g++ktLvfykgrap+g+k+dW+mheyrle Manes.02G035400.2.p 96 RDKAIYS-RHSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 ***.889***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-61	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	60.287	7	156	IPR003441	NAC domain
Pfam	PF02365	7.3E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MNTFPHVPPG FRFHPTDEEL VDYYLRKKVA SKRIDLDVIK DVDLYKIEPW DLQELCKIGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSRHSLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRMPT MRKVGDYDSP CWYDDQVSFM 180 PELDSPRRIT QPYASYLHHY PCKQEFELQY NMPHDPFLQL PQLESPKVPQ SAASVNCNSV 240 VPYGGFDRNN GSTLQSSTLT QEEQVQQNHH QNLNSLYHNN NGEQAVDQVT DWRVLDKFVA 300 SQLSHEDASK EANYSNAATF HVAHEQMNML ASESKRPEIV QEYASTSTSS CQIDLWK*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MNTFPHVPPG FRFHPTDEEL VDYYLRKKVA SKRIDLDVIK DVDLYKIEPW DLQELCKIGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSRHSLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRMPT MRKVGDYDSP CWYDDQVSFM  180
PELDSPRRIT QPYASYLHHY PCKQEFELQY NMPHDPFLQL PQLESPKVPQ SAASVNCNSV  240
VPYGGFDRNN GSTLQSSTLT QEEQVQQNHH QNLNSLYHNN NGEQAVDQVT DWRVLDKFVA  300
SQLSHEDASK EANYSNAATF HVAHEQMNML ASESKRPEIV QEYASTSTSS CQIDLWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-51	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.02G035400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605203	0.0	KR605203.1 Manihot esculenta NAC transcription factors 65 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021603634.1	0.0	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-165	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A251LEQ3	0.0	A0A251LEQ3_MANES; Uncharacterized protein
STRING	XP_002532571.1	0.0	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-161	NAC 007

Link Out ? help Back to Top
Phytozome	Manes.02G035400.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]