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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G011500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WRKY | ||||||||
Protein Properties | Length: 334aa MW: 37312.3 Da PI: 5.3885 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.5 | 1.3e-28 | 126 | 186 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs+edp+++++tY+g+H+++ Manes.02G011500.1.p 126 EDGYSWRKYGQKDILGTKYPRSYYRCTYRnsqNCWATKQVQRSDEDPTILDVTYRGTHTCS 186 8***************************98899**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-28 | 119 | 186 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.861 | 120 | 183 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-25 | 124 | 187 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.4E-39 | 125 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-27 | 126 | 185 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDNSCNWEKK TLVSELIQGM ELAKQLRLHL NTASSVEIRD SLVQRILSSY EKSLLILNWS 60 GSMGQQQNVG ATVGIVPESP ISMNGSPGSD DFDGGHSAFS KKRKTMPRWT DQVRVSSENG 120 LEGPHEDGYS WRKYGQKDIL GTKYPRSYYR CTYRNSQNCW ATKQVQRSDE DPTILDVTYR 180 GTHTCSHGQH SVPPPASPEK QEQKQNINQQ LQSQEALFNF QKSLIVNTKE DDNKEIAVPF 240 SFSPTYGSIK SSGTYSPSFI SPATPEPNYY VSPFQMANFA GVQNLQHHSE SDFAEIISAN 300 TSAANSPIVE PDFSLQALEL DPNFPFDMPE FFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-18 | 126 | 185 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G011500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT827578 | 0.0 | KT827578.1 Manihot esculenta WRKY transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021604396.1 | 0.0 | probable WRKY transcription factor 53 | ||||
TrEMBL | A0A140H8K7 | 0.0 | A0A140H8K7_MANES; WRKY transcription factor 3 | ||||
STRING | cassava4.1_011518m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 2e-72 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G011500.1.p |
Publications ? help Back to Top | |||
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