PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G005200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 26476.8 Da PI: 8.0095 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3.2e-08 | 14 | 43 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 rg WT+ Ed+ll+++++ +G g+W++ +++ Manes.02G005200.1.p 14 RGQWTPREDKLLINYIRAHGEGHWRSLPKK 43 89***********************99887 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6.1e-17 | 48 | 93 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l Manes.02G005200.1.p 48 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 93 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-10 | 5 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.597 | 9 | 42 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.03E-20 | 11 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 68 | 13 | 45 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-6 | 14 | 43 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 25.373 | 43 | 97 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-23 | 44 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-16 | 47 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 48 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-11 | 52 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGRAPCCSKV GLHRGQWTPR EDKLLINYIR AHGEGHWRSL PKKADIKRGN ITPDEDDLII 60 RLHSLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKRLNKT SGTRSSSSES KKKNKEGNKD 120 GANGKAAKSK IDLPKAIRVT SVSITRTSST SSLRGSSKTH AEVHNLPWLE MVCPNLEVRD 180 GIINDGETLP CNEDHDDLDM PTNENMLDEM FEEYEQLLRT DNYAQLDSFI DSLLA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-14 | 12 | 98 | 5 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G005200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021604250.1 | 1e-144 | transcription factor MYB15-like isoform X2 | ||||
TrEMBL | A0A2C9W9Y5 | 1e-172 | A0A2C9W9Y5_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_034078m | 1e-143 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 6e-46 | myb domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G005200.1.p |