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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G002300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | bHLH | ||||||||
Protein Properties | Length: 472aa MW: 52915.9 Da PI: 6.7901 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.8 | 1.9e-13 | 300 | 345 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+r+N++f Lr+++P+ K++Ka+ L Av YIk+L Manes.02G002300.1.p 300 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAVTYIKEL 345 799***********************6.....5****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.7E-46 | 24 | 205 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 1.01E-18 | 295 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.511 | 296 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.92E-15 | 299 | 349 | No hit | No description |
Pfam | PF00010 | 5.1E-11 | 300 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-17 | 300 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-17 | 302 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MEEIASPSSS STFMSFCQDS SPPLQQRLQF ILQTRPEWWV YAIFWQVSKD ATGSLVFTWG 60 DGHFRGTKEF AAKACNKQNQ PKFGFNLERK MINKDSQTLF SDDMDMDRLA DVDVIDYEWF 120 YTVSVTRSFA IDDGILGRTF GSGAFIWLTG NQELQMYECE RVKEARMHGI QTLVCISTSC 180 AVVELGSSNT IDKDWSLVHL CKSLFGGDTA CLISKEPSHE SQLQIPNTPF LDIGMYSASQ 240 KDTFAEKKNE GDKKKDGTGQ GRSSPDSARS DSDGNFAAGN TDRLKKRGRA QLNGKELTLN 300 HVEAERQRRE RLNHRFYALR SVVPNVSKMD KASLLADAVT YIKELKAKVD ELETKLQAVS 360 KKSKSPNISD SQISAESMID HIRSSTGYKT KAMELEVKIV GSEAMIRFLS PDVNYPAARL 420 MDALREVEFK VHHASMSSIK EMVLQDVVAR VPDGLTNEEV VRSAILQRMQ N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-31 | 18 | 205 | 3 | 192 | Transcription factor MYC3 |
4rqw_B | 3e-31 | 18 | 205 | 3 | 192 | Transcription factor MYC3 |
4rs9_A | 3e-31 | 18 | 205 | 3 | 192 | Transcription factor MYC3 |
4yz6_A | 3e-31 | 18 | 205 | 3 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 281 | 286 | DRLKKR |
2 | 305 | 310 | RQRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G002300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM061097 | 0.0 | HM061097.1 Hevea brasiliensis LMYC2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021603159.1 | 0.0 | transcription factor MYC3-like | ||||
TrEMBL | A0A2C9W9W2 | 0.0 | A0A2C9W9W2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_024442m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 1e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G002300.1.p |