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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Manes.02G002300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family |
bHLH |
Protein Properties |
Length: 472aa MW: 52915.9 Da PI: 6.7901 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Manes.02G002300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 41.8 | 1.9e-13 | 300 | 345 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er+RR+r+N++f Lr+++P+ K++Ka+ L Av YIk+L
Manes.02G002300.1.p 300 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAVTYIKEL 345
799***********************6.....5****************99 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 472 aa
Download sequence Send
to blast |
MEEIASPSSS STFMSFCQDS SPPLQQRLQF ILQTRPEWWV YAIFWQVSKD ATGSLVFTWG 60 DGHFRGTKEF AAKACNKQNQ PKFGFNLERK MINKDSQTLF SDDMDMDRLA DVDVIDYEWF 120 YTVSVTRSFA IDDGILGRTF GSGAFIWLTG NQELQMYECE RVKEARMHGI QTLVCISTSC 180 AVVELGSSNT IDKDWSLVHL CKSLFGGDTA CLISKEPSHE SQLQIPNTPF LDIGMYSASQ 240 KDTFAEKKNE GDKKKDGTGQ GRSSPDSARS DSDGNFAAGN TDRLKKRGRA QLNGKELTLN 300 HVEAERQRRE RLNHRFYALR SVVPNVSKMD KASLLADAVT YIKELKAKVD ELETKLQAVS 360 KKSKSPNISD SQISAESMID HIRSSTGYKT KAMELEVKIV GSEAMIRFLS PDVNYPAARL 420 MDALREVEFK VHHASMSSIK EMVLQDVVAR VPDGLTNEEV VRSAILQRMQ N*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4rqw_A | 3e-31 | 18 | 205 | 3 | 192 | Transcription factor MYC3 |
4rqw_B | 3e-31 | 18 | 205 | 3 | 192 | Transcription factor MYC3 |
4rs9_A | 3e-31 | 18 | 205 | 3 | 192 | Transcription factor MYC3 |
4yz6_A | 3e-31 | 18 | 205 | 3 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 281 | 286 | DRLKKR |
2 | 305 | 310 | RQRRER |