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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.02G001600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | NAC | ||||||||
Protein Properties | Length: 431aa MW: 48921.1 Da PI: 6.8202 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.8 | 6.5e-51 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi+evd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg Manes.02G001600.1.p 15 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIREVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATG 103 69****************************.9***************964444222455******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk ++s + + +gl+ktLvfykgrap+g+k+dW+mheyrl Manes.02G001600.1.p 104 RDKIIYS-GFRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 143 *******.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-57 | 11 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.948 | 15 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-26 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MPEDMNLSIN GQSQVPPGFR FHPTEEELLH YYLRKKVAYE KIDLDVIREV DLNKLEPWDI 60 QEKCKIGSTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKIIYS GFRRIGLRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDSTHDT TVSHLAHGSN TIGEAIPEEG WVVCRVFRKK 180 NYQKTLESPK GSSSSMDSKT QILSAGNDGV LDQILLYMGR TCKMENETFS HMNLSNNSNN 240 NSIRFLSANN TGISEGLHER FMHLPRLDSP TLPTVTINSP SFDQESNFKS CYQSYDEMLS 300 ENNEPSSTTT TTNHHHHHHH HPHPQGNGFD MTSIHEQNKS GFNDWATFDR LVASQLNGQV 360 EASKQLSCFS EPNGCFGLSP DDDMHLSQLH VHSNRSNQTN SQVYSSENDL WSFTKSSSPS 420 SSDPLCHLSV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-47 | 15 | 181 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.02G001600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605146 | 0.0 | KR605146.1 Manihot esculenta NAC transcription factors 8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021603613.1 | 0.0 | NAC domain-containing protein 43-like isoform X1 | ||||
Swissprot | Q84WP6 | 1e-118 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A0M4FER7 | 0.0 | A0A0M4FER7_MANES; NAC transcription factors 8 | ||||
STRING | cassava4.1_008093m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3031 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-101 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.02G001600.1.p |