PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

HD-ZIP

Protein Properties

Length: 305aa MW: 33575.8 Da PI: 7.2239

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G272100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4e-18	137	191	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le++F+++++++ +++ eLAk+l+L rqV vWFqNrRa+ k Manes.01G272100.1.p 137 RKKLRLSKEQSLLLEDAFKEHNTLNPKQKLELAKQLNLRPRQVEVWFQNRRARTK 191 788899***********************************************98 PP
2	HD-ZIP_I/II	125	3.3e-40	137	226	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+ lLE+ F+e+++L+p++K ela++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr + Manes.01G272100.1.p 137 RKKLRLSKEQSLLLEDAFKEHNTLNPKQKLELAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTQENRRLQKEVQELR-A 225 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Manes.01G272100.1.p 226 L 226 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	1.9E-26	1	104	IPR006712	HD-ZIP protein, N-terminal
SuperFamily	SSF46689	1.0E-19	122	194	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.1E-19	123	192	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.637	133	193	IPR001356	Homeobox domain
SMART	SM00389	2.5E-16	135	197	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-15	137	191	IPR001356	Homeobox domain
CDD	cd00086	6.80E-16	137	194	No hit	No description
PROSITE pattern	PS00027	0	168	191	IPR017970	Homeobox, conserved site
SMART	SM00340	6.8E-26	193	236	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.7E-11	193	227	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MAEKDDGLGL GLGLSLGSPA APQILPSLKL NLMSFPSELM QNNHSRTDLN DLFQACDRNA 60 DAWSFPRGID VNLIPSLADC DDEVGVSSPN STISSISGKR NEREQIGEET EAERASCSRG 120 DGGSDDEDVG AGGDASRKKL RLSKEQSLLL EDAFKEHNTL NPKQKLELAK QLNLRPRQVE 180 VWFQNRRART KLKQTEVDCE YLKRCCENLT QENRRLQKEV QELRALKLSP QQYMHMNPPT 240 TLTMCPSCER VAVSSSFSSV AATAASTAPC RPMGNPYTQR AMPSKPWAAL PIQQRPFGTP 300 ASRS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	SRKKLRL
2	185	193	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G272100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021614834.1	0.0	homeobox-leucine zipper protein HAT3-like
Swissprot	P46602	1e-104	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A2C9WQV6	0.0	A0A2C9WQV6_MANES; Uncharacterized protein
STRING	cassava4.1_012590m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1239	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	3e-96	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	Manes.01G272100.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]