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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G271300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 27577.3 Da PI: 5.3991 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.9e-18 | 84 | 133 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g Manes.01G271300.1.p 84 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYRTAEMAARAHDVAALAIKG 133 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 24 | No hit | No description |
PROSITE profile | PS51032 | 22.84 | 84 | 141 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-36 | 84 | 147 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 84 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-21 | 84 | 142 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.4E-12 | 84 | 133 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.44E-31 | 85 | 141 | No hit | No description |
PRINTS | PR00367 | 2.5E-10 | 85 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEKHINLDID AQEAFLASSS TASCASSSPS SSSSITFSCS KTEDSSCTAP KGSSKTAKEL 60 ENGNNESRKR QKPDDENGNN KHPTYRGVRM RSWGKWVSEI REPRKKSRIW LGTYRTAEMA 120 ARAHDVAALA IKGSSAFLNF PLLAHELPRP VTKSPKDIQA AAAKAATAAF PERTHCQAEA 180 EHISDTLALD NTQESTSSPS ADSDDTLFDL PDLFIDGVDQ RNGFCEYSSS WQLCAADTGF 240 RLEEPYLWEY N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 82 | 141 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G271300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301249.3 | 1e-101 | ethylene-responsive transcription factor ERF038 | ||||
Swissprot | Q8LBQ7 | 5e-67 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A2C9WPK9 | 0.0 | A0A2C9WPK9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026788m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 7e-58 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G271300.1.p |
Publications ? help Back to Top | |||
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