PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G269700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 455aa    MW: 49249.5 Da    PI: 8.6622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G269700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15281326555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Manes.01G269700.1.p 281 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 326
                          9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-19274338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-13281326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-17281330No hitNo description
Gene3DG3DSA:4.10.280.104.9E-18281335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-18282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MSQCVPSWDL DDNPSPANQT LRSQSNSVAP DVPMFQYEVA ELTWENGQLA MHGLGPPRVP  60
AKPMASTSPS KYTSWDKPRA NGTLESIVNQ ATSLPHRKPG LKNSGCGSEE IVPWFEHNRA  120
AVVPAASATM TMDAMVPCSN RTNERSAHVM GNCVVGSSTR VGSCSGPAVT QDEETPLNGK  180
RQRVARVPVA PEWSSRQSVS GSATVGRDSQ RDLGVGFTST SFGSQENNSS SKPGTKTTAA  240
DENDSVCYSR PQREAGDEEE EKKGNGKSSV STKRSRAAAI HNQSERKRRD KINQRMKTLQ  300
KLVPNSSKTD KASMLDEVIE YLKQLQAQVQ MMNRMNMQPL ILPMAMQQQL QMSMLNMGMG  360
VGMGMGVNVM DMNSVARPNI GGLSPVLHPT PFIPMASWDG SGDRLQSSSN TVMPDPLSAF  420
LACQSQPIPM DAYSRMAAIY QQLQQQPPAS NSKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284289ERKRRD
2285290RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G269700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021614535.10.0transcription factor UNE10
SwissprotQ8GZ381e-122UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A2C9WRT80.0A0A2C9WRT8_MANES; Uncharacterized protein
STRINGcassava4.1_007418m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-113bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]