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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G262100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 32317.6 Da PI: 8.075 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 33 | 84 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s++ GVr+++ +grWvAeI+d s +r r +lg+++t+eeAa+a+++a+++l+ge Manes.01G262100.1.p 33 SRFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 84 6899******.7*********43...36**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.36E-32 | 33 | 90 | No hit | No description |
Pfam | PF00847 | 1.8E-15 | 33 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-20 | 33 | 91 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-36 | 34 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.455 | 34 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-28 | 34 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-7 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MELKSGQVKP NRYQQHDVSS VQQCHFADEY VDSRFVGVRQ RPSGRWVAEI KDSSQRVRLW 60 LGTYDTPEEA ARAYDEAARA LRGENARTNF TSVNNNTNSN TTQYGSSPIN GGFLSESDVR 120 HSLSFSLLKA KLSKNIQSIM ARTTESKSTK NRVSDHFTFA SIFQFRSQQY QKPVDMNKIE 180 KVVQPSIIVP RVTDDQHEPS SWETSRLSEC SNEWIRLKEQ GLDSDGSDTG EASIDDQRLT 240 DQMMGWIDRP EISGCRGDDS RSKRFKVSSS VVVPPTFSGS PFRGNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 33 | 95 | 13 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G262100.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622987.1 | 0.0 | ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A2C9WRL2 | 0.0 | A0A2C9WRL2_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021075m | 1e-179 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8324 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-14 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G262100.1.p |