PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G253400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 344aa    MW: 38351.4 Da    PI: 5.1326
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G253400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.36.6e-28129188258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                           Dgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k++++s++dpk+ e+tY+g+H++
  Manes.01G253400.1.p 129 GDGYSWRKYGQKDILGANFPRGYYRCTHRnsqGCLATKQIQKSDQDPKIYEVTYRGRHTC 188
                          5***************************98889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-27123189IPR003657WRKY domain
PROSITE profilePS5081123.02123186IPR003657WRKY domain
SuperFamilySSF1182902.22E-24127188IPR003657WRKY domain
SMARTSM007742.0E-38128190IPR003657WRKY domain
PfamPF031066.7E-26130188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEKAMDLEQR TLTVVAELIQ GKGLAEHLRK HFNSISSPET RQFFVEKILS SYDKALSMLN  60
WDASCVVEIK PAISALESPH CYANISPRSD VSDQDCKDHR DVYKKRKTES RWTEQVKICS  120
GTGLEGPLGD GYSWRKYGQK DILGANFPRG YYRCTHRNSQ GCLATKQIQK SDQDPKIYEV  180
TYRGRHTCFQ ASHLAATSSS TSLKNAKTKQ DSYSCGAEQP EQKPKPLNDL SFNSTGVKSQ  240
DLDIVEDIFP LFSFPDSSTG NENEENDFLG SLSPALISSS TSDSSYFALS SCHMNNSEIE  300
ARTLESDSTQ NSASNSPIRY WDISLDDIDF DTNFPLENSS VFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-191291861774Disease resistance protein RRS1
5w3x_D8e-191291861774Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G253400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276300.0KT827630.1 Manihot esculenta WRKY transcription factor 55 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021615382.10.0probable WRKY transcription factor 53
TrEMBLA0A140H8Q90.0A0A140H8Q9_MANES; WRKY transcription factor 55
STRINGcassava4.1_011089m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.18e-44WRKY family protein
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]