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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G249600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 33801.4 Da PI: 4.8288 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.3e-19 | 105 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +gr++AeIrd + r +r++lg+f+taeeAa +++a+ k++g Manes.01G249600.1.p 105 KKYRGVRQRP-WGRFAAEIRDpF-----RrTRVWLGTFDTAEEAAIVYDNAAIKIKG 155 59********.**********66.....45************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.05E-32 | 105 | 162 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-29 | 106 | 163 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-12 | 106 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 106 | 162 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.55 | 106 | 163 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-37 | 106 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 107 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MISSSSVKYS EHKTVTDKIA KCNDSNSTRV VRIYVTDGDA TDSSSDENEN PILGHQRIKK 60 HINEVRIKDC VECSNGRAHE CSKSRPNKQP LRKSTRDQLY YPESKKYRGV RQRPWGRFAA 120 EIRDPFRRTR VWLGTFDTAE EAAIVYDNAA IKIKGPNALT NFIKPPYDSG RESHSLSSPT 180 SVLRFQYTEE AGNEPQVLDG NVSRKAEEIK EKECDWRLDK QIDENDWKPV QCVAEEDPGG 240 YYFEELIDFE NHPPVCFDEC TIPDTELTDD FADVAVHLNL DGDFGSCLWN VDEYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-22 | 105 | 162 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-22 | 103 | 162 | 2 | 62 | ATERF1 |
3gcc_A | 5e-22 | 103 | 162 | 2 | 62 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G249600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612224.1 | 0.0 | ethylene-responsive transcription factor CRF6-like | ||||
Swissprot | Q9SUE3 | 4e-46 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A2C9WQC9 | 0.0 | A0A2C9WQC9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_024908m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-48 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G249600.1.p |
Publications ? help Back to Top | |||
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