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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.01G245200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 20860.3 Da PI: 5.3871 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.8 | 2.3e-17 | 34 | 84 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f +e+Aaka++ a+ +l+g Manes.01G245200.1.p 34 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFRAPEMAAKAYDVAAYCLKG 84 68*****887.**********843...6************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.3E-11 | 34 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-34 | 35 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.629 | 35 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-21 | 35 | 94 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 35 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.71E-29 | 36 | 93 | No hit | No description |
PRINTS | PR00367 | 2.5E-12 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 74 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEQPPYSEEE LTTSSPQARI NQNSDAPRGG TRHPVYRGVR KRRWGKWVSE IREPRKKSRI 60 WLGSFRAPEM AAKAYDVAAY CLKGCKAQLN FPDEVEDLPR PSSCLARDIQ AAATKAAHSM 120 MINAEEKSSC SITNSDGDRE SDDFWGEIDL PELMSSGMSW SSCAWTSFAG ESTLQDGEAP 180 QMFKACL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 30 | 94 | 9 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00120 | DAP | Transfer from AT1G01250 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.01G245200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021628747.1 | 1e-138 | ethylene-responsive transcription factor ERF023-like | ||||
Swissprot | Q1ECI2 | 1e-56 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A2C9WP83 | 1e-137 | A0A2C9WP83_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_034273m | 1e-137 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6375 | 28 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 6e-59 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.01G245200.1.p |
Publications ? help Back to Top | |||
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