PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G245200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 188aa    MW: 20860.3 Da    PI: 5.3871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G245200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-173484155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Manes.01G245200.1.p 34 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFRAPEMAAKAYDVAAYCLKG 84
                         68*****887.**********843...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-113484IPR001471AP2/ERF domain
SMARTSM003801.5E-343598IPR001471AP2/ERF domain
PROSITE profilePS5103222.6293592IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-213594IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-303593IPR001471AP2/ERF domain
CDDcd000189.71E-293693No hitNo description
PRINTSPR003672.5E-123647IPR001471AP2/ERF domain
PRINTSPR003672.5E-127494IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEQPPYSEEE LTTSSPQARI NQNSDAPRGG TRHPVYRGVR KRRWGKWVSE IREPRKKSRI  60
WLGSFRAPEM AAKAYDVAAY CLKGCKAQLN FPDEVEDLPR PSSCLARDIQ AAATKAAHSM  120
MINAEEKSSC SITNSDGDRE SDDFWGEIDL PELMSSGMSW SSCAWTSFAG ESTLQDGEAP  180
QMFKACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-173094974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G245200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628747.11e-138ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI21e-56ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A2C9WP831e-137A0A2C9WP83_MANES; Uncharacterized protein
STRINGcassava4.1_034273m1e-137(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.16e-59ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]